Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0420 ATGGCCCCAGCTAAAGTTGATAGTTCAAAGAAGGCTGATCCAAAGGCTCAGGCCTTGAAAACTGCTAAGGCAGTGAAGTCAGGTGCTACCTTTAAGAAGAAGGCCAAGAAGATCAGAACAAAGGTCACATTCCATCGCCCTAAGACTTTGAAGAAGGATAGGAACCCCAAATACCCCCGCATTAGTGCCCCACCAAGGAACAAGCTTGACCATTATCAAATTCTGAAATACCCTCTCACAACCGAGTCGGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCTGACAAGAAGAAGATCAAGGATGCAGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTAAACACTTTGATCAGGCCTGATGGAACCAAGAAGGCTTATGTTAGGTTGACACCTGATTATGATGCCTTGGATGTAGCAAACAAGATTGGAATCATCTAA 465 0.4344 MAPAKVDSSKKADPKAQALKTAKAVKSGATFKKKAKKIRTKVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0420 154 MobiDBLite consensus disorder prediction 1 24 - -
Ahy18g0420 154 Pfam Ribosomal protein L23, N-terminal domain 15 64 IPR005633 -
Ahy18g0420 154 Pfam Ribosomal protein L23 74 136 IPR013025 GO:0003735|GO:0005840|GO:0006412
Ahy18g0420 154 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Ahy18g0420 154 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 154 - -
Ahy18g0420 154 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 71 147 IPR012678 GO:0003735|GO:0005840|GO:0006412
Ahy18g0420 154 Hamap 50S ribosomal protein L23 [rplW]. 74 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Ahy18g0420 154 TIGRFAM uL23_arch: ribosomal protein uL23 78 154 IPR019985 GO:0003735|GO:0005840|GO:0006412
Ahy18g0420 154 ProSitePatterns Ribosomal protein L23 signature. 132 147 IPR001014 -
Ahy18g0420 154 Gene3D - 35 154 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0420 Ahy-Chr18 3564201 3565622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0420 1 154 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 89.610 2.86e-72 212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0420 18 3564201 3565622 Ahy18g0420 18 3564201 3565622 ECH
Ahy18g0420 18 3564201 3565622 Ahy13g0421 13 4390070 4391994 ECH
Ahy18g0420 18 3564201 3565622 Ahy8g1226 8 27611334 27612740 hybridization
Ahy18g0420 18 3564201 3565622 Ahy13g0421 13 4390070 4391994 PCT
Ahy13g0421 13 4390070 4391994 Ahy18g0420 18 3564201 3565622 PCT