Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0411 ATGGCTCAAAGAATAGGGACGAAGTTGTTCGTGAGCAGATTATCGTTTTACACTACCAAAGACCAGTTGAAGAACTTGTTTTCTCCTTTCGGACAAGTTACCGAAGTGAATCTGGTGATGGATTCCAGAACTGGAAGGACCAAAGGATTTGGTTTTGTTTCCTACCAATCTGAAAACGAAGCACTCAAGGCTATCAAAGCCATGAATGGCCGGATAATTGCAGGAAGGATTATTTTCGTTGAACCAGCTAAAGACACTAGATGA 264 0.4167 MAQRIGTKLFVSRLSFYTTKDQLKNLFSPFGQVTEVNLVMDSRTGRTKGFGFVSYQSENEALKAIKAMNGRIIAGRIIFVEPAKDTR* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0411 87 PANTHER BNAA02G06700D PROTEIN 4 84 - -
Ahy18g0411 87 Gene3D - 2 87 IPR012677 -
Ahy18g0411 87 SUPERFAMILY RNA-binding domain, RBD 6 85 IPR035979 GO:0003676
Ahy18g0411 87 SMART rrm1_1 8 81 IPR000504 GO:0003723
Ahy18g0411 87 PANTHER TRANSFORMER-2-RELATED 4 84 - -
Ahy18g0411 87 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Ahy18g0411 87 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0411 Ahy-Chr18 3497909 3498887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0411 6 80 Eukaryotic Initiation Factors Gene Family AT1G71770 38.667 5.75e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0411 K13195 - gmx:100781760 118.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0411 18 3497909 3498887 Ahy18g0411 18 3497909 3498887 ECH
Ahy18g0411 18 3497909 3498887 Ahy8g1215 8 27522846 27524075 hybridization