Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0409 ATGTCTGCGGCACTCGATATGACCCTTGACGACATCATTAAGAACAACAAGAAGTCCGGATCAGGCGGATCCCGCGGCCGTGGTCGCCAACCCGGATCCGGACCCGGACCTACTCGCCGCTTCCCAAACCGCGCCGCCAACCGTCTTGCGCCTTACGCCACCGCTAAGGCGCCGGAGACAGCGTGGCAGCACGACCTGTATGCAGATCAGGCTGTGGGAGCTTTCCCTGCGCAGGGTGGTCGAGCGTCGTCGATTGAAACGGGGACCAAGCTATACATCTCGAATTTGGATTACGGTGTTTCTAACGATGATATCAAGGAATTATTTTCTGAAGTTGGTGACTTGAAACGGCACACTGTTCATTACGACAGGAGTGGGAGATCGAAGGGTACAGCGGAAGTAGTCTTCTCGCGGAGAGCTGATGCTGTAGCTGCAGTGAAGAGGTACAACAACGTGCAACTGGATGGGAAACCAATGAAGGTAGAGATTGTTGGAACGAACATCACAACACAAGCTGTTGCTCCTGCTGCAAATGGAGGTTTTGGAAATTTGGGTGTAGTTCCCAGAAGTGGACAAGGGAGAAGTGGAGGGCCATTAGTACGACCACGTGGTGGTGGAAGTAGAGGACGTGGCCCTCCTCGAAGAGGTCGAGGGCGTGGAAGAGGTCGTGGCGGCGAGAAGGTATCTGCGGAAGATCTTGATGCTGATTTGGAGAAGTACCATTCAGAGGCAATGCAATTAAACTGA 747 0.5355 MSAALDMTLDDIIKNNKKSGSGGSRGRGRQPGSGPGPTRRFPNRAANRLAPYATAKAPETAWQHDLYADQAVGAFPAQGGRASSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNITTQAVAPAANGGFGNLGVVPRSGQGRSGGPLVRPRGGGSRGRGPPRRGRGRGRGRGGEKVSAEDLDADLEKYHSEAMQLN* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0409 248 SMART rrm1_1 90 162 IPR000504 GO:0003723
Ahy18g0409 248 SUPERFAMILY RNA-binding domain, RBD 78 196 IPR035979 GO:0003676
Ahy18g0409 248 CDD RRM_THOC4 89 163 - -
Ahy18g0409 248 Coils Coil 230 248 - -
Ahy18g0409 248 MobiDBLite consensus disorder prediction 222 241 - -
Ahy18g0409 248 MobiDBLite consensus disorder prediction 1 48 - -
Ahy18g0409 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Ahy18g0409 248 MobiDBLite consensus disorder prediction 184 248 - -
Ahy18g0409 248 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 247 - -
Ahy18g0409 248 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 247 - -
Ahy18g0409 248 Pfam C-terminal duplication domain of Friend of PRMT1 201 243 IPR025715 -
Ahy18g0409 248 SMART FoP_duplication_2 177 248 IPR025715 -
Ahy18g0409 248 Gene3D - 76 231 IPR012677 -
Ahy18g0409 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0409 Ahy-Chr18 3476602 3479781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0409 88 163 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 2.90e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0409 K12881 - gmx:100817317 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0409 18 3476602 3479781 Ahy18g0409 18 3476602 3479781 ECH
Ahy18g0409 18 3476602 3479781 Ahy8g1213 8 27489208 27492427 hybridization