Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0400 ATGGTTTTCCCTTCAATCCCAGTGTATTTAGATCCTCCCAATTGGATTCACCAGCAGCAGCAGGTAAATGGCAATGGCAATGAGAGTTCAACTCAGGTGGTTCCGAGATCGGGATCAGAGGGAGGACTCAAGTGTCCTCGGTGTGAATCCAGCAACACAAAGTTCTGCTACTTCAACAACTACAGCCTGTCTCAGCCGCGACACTTCTGCAAGACGTGTAGGCGTTACTGGACAAGAGGCGGTGCTCTTAGGAACGTTCCGGTTGGTGGTGGTTTCCGGAGAAACAAGAAGACCAAGAGGAGTACTAGTAGCAGTAGCCGCCCAGGAGGAAACACTGAAAAGCAGTTAACATCAACATCATCACTTCCGTCAGGTTTTAACCCAGGTTTCATGGCTTCTCTTGAGAACATGACCCTCTATGGAGGAGGATTGCATCAGCATCAGCAGCAGTTTCCTAATTTCTTGAGTGGTTTTGATCCAACTACCACTTCTTCTTCGTTCCCTTTCCTGTTTGGAGAATCTAGGGTTAAATTGGAATCTGGAAACGGAGGGCTATTAAGTACTAGTTTGCCAGAGAACTATTCATGGACTGATCTTGCAGCTGCATCTTCTTCCGCTGCTCATCATCTCTTGTGA 636 0.4733 MVFPSIPVYLDPPNWIHQQQQVNGNGNESSTQVVPRSGSEGGLKCPRCESSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKKTKRSTSSSSRPGGNTEKQLTSTSSLPSGFNPGFMASLENMTLYGGGLHQHQQQFPNFLSGFDPTTTSSSFPFLFGESRVKLESGNGGLLSTSLPENYSWTDLAAASSSAAHHLL* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0400 211 MobiDBLite consensus disorder prediction 102 124 - -
Ahy18g0400 211 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Ahy18g0400 211 PANTHER DOF ZINC FINGER PROTEIN DOF2.4-LIKE 32 156 - -
Ahy18g0400 211 MobiDBLite consensus disorder prediction 87 124 - -
Ahy18g0400 211 MobiDBLite consensus disorder prediction 21 37 - -
Ahy18g0400 211 Pfam Dof domain, zinc finger 43 97 IPR003851 GO:0003677|GO:0006355
Ahy18g0400 211 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Ahy18g0400 211 MobiDBLite consensus disorder prediction 21 43 - -
Ahy18g0400 211 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 156 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0400 Ahy-Chr18 3413945 3415281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0400 40 99 C2C2-Dof Transcription Factor Family AT2G37590 88.333 1.06e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy18g0400 zf-Dof 3.50E-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0400 - - adu:107461669 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0400 18 3413945 3415281 Ahy18g0400 18 3413945 3415281 ECH
Ahy18g0400 18 3413945 3415281 Ahy8g1205 8 27422286 27423716 hybridization
Ahy18g0400 18 3413945 3415281 Ahy13g0452 13 4646577 4648241 PCT
Ahy13g0452 13 4646577 4648241 Ahy18g0400 18 3413945 3415281 PCT