Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0390 ATGGCCAGCAATGTGGTCAACATTATTGGATCTCTCATCATCTCTCTAATGTGGATGGTGGAGGCTAGAATCCCAGGAGTGTACTCCGGTGGTGCTTGGCAAACTGCTCACGCCACATTCTACGGAGGATCTGACGCTTCGGGAACCATGGGGGGAGCATGTGGGTACGGAAACCTGTATAGCCAAGGATATGGAGTGAACACGGCGGCGCTGAGCACGGCGCTCTTCAATAGCGGTCTAAGCTGCGGTGCCTGCTTTGAGATCAAGTGTGCCAACGACAGGCAGTGGTGCCACTCCGGCAGCCCTTCCATATTCATAACCGCAACAAACTTCTGCCCCCCAAACTACGCACTCCCAAGTGACAATGGCGGTTGGTGCAACCCTCCCAGACCTCACTTCGATCTTGCCATGCCAATGTTCCTCAAGATCGCTGAGTACCGTGCCGGCATCGTCCCCGTTGCCTATCGCCGGGTGCCATGTAGAAAGCACGGTGGGATCAGGTTCACAATTAACGGATTCCGTTACTTCAATTTGGTATTGATCAGCAACGTCGCGGGTGCAGGGGATATAGTGAGGACGTACGTGAAGGGTTCAAGAACCGGGTGGATGCCAATGAGCAGGAACTGGGGCCAGAACTGGCAGTCAAACGCGGTCTTAGTGGGTCAAGCCTTGTCCTTCCGTGTCACCGCCAGTGACCGTCGCACCTCCACCTCTTGGAACATTGCTCCCTCCAACTGGCAGTTCGGTCAAACTTTTACCGGAAAGAATTTCCGGGTTTAA 780 0.5436 MASNVVNIIGSLIISLMWMVEARIPGVYSGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKHGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGSRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTASDRRTSTSWNIAPSNWQFGQTFTGKNFRV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0390 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Ahy18g0390 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Ahy18g0390 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Ahy18g0390 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Ahy18g0390 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Ahy18g0390 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Ahy18g0390 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Ahy18g0390 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Ahy18g0390 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Ahy18g0390 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Ahy18g0390 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Ahy18g0390 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Ahy18g0390 259 SMART dpbb_1 68 155 IPR007112 -
Ahy18g0390 259 PANTHER EXPANSIN 6 258 - -
Ahy18g0390 259 Gene3D - 21 161 IPR036908 -
Ahy18g0390 259 Gene3D - 165 257 IPR036749 -
Ahy18g0390 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Ahy18g0390 259 PANTHER EXPANSIN-A15 6 258 IPR002963 GO:0009664
Ahy18g0390 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Ahy18g0390 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Ahy18g0390 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Ahy18g0390 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Ahy18g0390 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Ahy18g0390 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Ahy18g0390 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Ahy18g0390 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0390 Ahy-Chr18 3333336 3335566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0390 16 259 Expansin Gene Family AT2G39700 87.705 9.90e-164 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0390 - - gmx:100809139 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0390 18 3333336 3335566 Ahy18g0390 18 3333336 3335566 ECH
Ahy18g0390 18 3333336 3335566 Ahy17g1078 17 14495784 14498051 ECH
Ahy18g0390 18 3333336 3335566 Ahy13g0462 13 4766751 4769163 ECH
Ahy14g1631 14 87712199 87715383 Ahy18g0390 18 3333336 3335566 ECH
Ahy12g1782 12 96078704 96081830 Ahy18g0390 18 3333336 3335566 ECH
Ahy18g0390 18 3333336 3335566 Ahy8g1196 8 27334679 27336939 hybridization
Ahy18g0390 18 3333336 3335566 Ahy13g0462 13 4766751 4769163 PCT
Ahy13g0462 13 4766751 4769163 Ahy18g0390 18 3333336 3335566 PCT