Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0370 ATGAACTCGGATATAACTCACGCCACGACGGCGTCGTATTGGTGCTACAGCTGTACACGTTTCGTTCACCTTCTCGACCGACACGACGTCGTTTGCCCCCACTGCCAAAGCGGTTTCGTTGAAGAGATCCATGCCGGCCAGTCCCCTGCCATGTCTCTCTTCGCCGACGGTCTTCAAGCATCTCGCCGCCAAGGCTTCCGCCGGAGGCGCCGAAACGCTGGCAGCCGCTCGCCGTTTAACCCGGTTATCGTTCTCCGTGGACCAGGGGAGGATGGCGCTGCCGGAGGCGATAACGAGGGTTCCACTTTCGAGTTGTACTATGACGACGGCGATGGTTCCGGTCTTCGTCCTCTGCCGCCGACGATGTCAGAGTTTTTGCTCGGATCTGGATTCGATAGGTTACTAGAGCAGTTCTCTCAGATCGAGATCAACGGATTTGGTCGGCCGGAGAATCCGCCGGCATCGAAGGCGGCGATAGAGTCAATGCCAACGGTTGAGATCGGAGGCTCTCACGTGGAGACGGAAACTTACTGCGCCGTGTGCAAGGAAGCCTTTGAGCTCGGTGCGGAGGCGCGTGAGATGCCGTGTAAACACCTTTACCACTCCGATTGCATCATGCCGTGGCTCACGATGCGGAATTCGTGCCCTGTGTGCCGCCACGAGCTGCCGTCCGATCAGAACGCGGCGGAAGGGAGAGTCGCCGGTCAGATCGATGAGGAAGCGGTAGGGTTGACCATATGGAGGTTGCCGGGAGGCGGTTTCGCCGTCGGAAGATTCTCCGGCGGCCGAAGATCCGGAGAGAACCGTTTGCCCGTCGTGTATACCGAGATGGACGGCGGAGGCAGCGGTGGAAGCAATGGAGGAAACTCGAACGGTGGTTCTAGAAGAATATCCCGCGCAGTTGGAAGCAGTAGGGTTAGGGAGAATCGCGGAATTGGAAGAATTTTCCGCAATTTCTTTTCCTTCTTCGGGAGAATTGGATCTAGGTCACGTTCCTCTTCGTCTTCGTCATCGTCGTATTCAGGTTCTGAGCATGGATCAGTGAGTCGAAGTCACAGCTATTCAAGTTCGTTTTTCAATAGAAACTCAGGGAGAAGAAGAACTTGGGTCTTGGAAGATTGA 1122 0.5606 MNSDITHATTASYWCYSCTRFVHLLDRHDVVCPHCQSGFVEEIHAGQSPAMSLFADGLQASRRQGFRRRRRNAGSRSPFNPVIVLRGPGEDGAAGGDNEGSTFELYYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFSQIEINGFGRPENPPASKAAIESMPTVEIGGSHVETETYCAVCKEAFELGAEAREMPCKHLYHSDCIMPWLTMRNSCPVCRHELPSDQNAAEGRVAGQIDEEAVGLTIWRLPGGGFAVGRFSGGRRSGENRLPVVYTEMDGGGSGGSNGGNSNGGSRRISRAVGSSRVRENRGIGRIFRNFFSFFGRIGSRSRSSSSSSSSYSGSEHGSVSRSHSYSSSFFNRNSGRRRTWVLED* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0370 373 MobiDBLite consensus disorder prediction 273 304 - -
Ahy18g0370 373 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Ahy18g0370 373 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Ahy18g0370 373 SMART ring_2 178 218 IPR001841 -
Ahy18g0370 373 MobiDBLite consensus disorder prediction 67 95 - -
Ahy18g0370 373 PANTHER OS05G0110000 PROTEIN 8 311 - -
Ahy18g0370 373 MobiDBLite consensus disorder prediction 282 298 - -
Ahy18g0370 373 MobiDBLite consensus disorder prediction 327 358 - -
Ahy18g0370 373 SUPERFAMILY RING/U-box 158 225 - -
Ahy18g0370 373 CDD RING-H2_RNF126_like 178 219 - -
Ahy18g0370 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 225 IPR013083 -
Ahy18g0370 373 Pfam Protein of unknown function (DUF1117) 242 361 IPR010543 -
Ahy18g0370 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 311 - -
Ahy18g0370 373 Pfam Ring finger domain 177 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0370 Ahy-Chr18 3188845 3190713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0370 117 230 C3H Transcription Factor Family AT5G01980 43.860 2.34e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0370 - - aip:107612938 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0370 18 3188845 3190713 Ahy18g0370 18 3188845 3190713 ECH
Ahy18g0370 18 3188845 3190713 Ahy13g0482 13 4949761 4951590 ECH
Ahy18g0370 18 3188845 3190713 Ahy8g1176 8 27094613 27096302 hybridization
Ahy18g0370 18 3188845 3190713 Ahy13g0482 13 4949761 4951590 PCT
Ahy13g0482 13 4949761 4951590 Ahy18g0370 18 3188845 3190713 PCT