Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0340 ATGACAAATAATCCTTACTACTTGAACAACAATGGTTATTGGTTCGACCTTAATTCTCCAAGCAGCACCTATGTTTTTGGTTCCAATCATCACGAGTCTCCACCAAGAATTGAAGCTCTTCCTCTCCTGAATAAGCTAAGCCCTAGCAGGAGTACTAGTAGTAGGCCTCAAGATCTGGAATCTTCGTTTGGTGCCATGGAAGTGAAGGAGAAGCACAAGAGAGGAGATGACGGCGATGAGAGTGTGACGGTGGCTTTGCACTTAGGGCTTCCAGAAACAAGAAGTAAGAATATGACATGCGAAGAAGAAGTTTCAGCAGCGTCAGTGTCACAAGAACAAGAAGAAGGAGGAGGAGGAGGAGGAAGAGGTTCTGATTCAAATTCAAATTCGATGAATCGAGGTCAATATTGGATCCCAACACCGGCTCAGATTCTGATTGGTCCAACACAGTTCTCTTGCCCCCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATATAGGAAGGGGCCAGAATCACTGAGGGGAACACAACCAACAGCAATGCTTAGGCTTCCATGCTACTGCTGTGCACCAGGGTGTAAGAACAACATTGATCATCCAAGAGCCAAGCCTCTCAAAGATTTCAGAACCCTCCAAACACACTACAAGAGGAAGCATGGAATCAAGCCTTTCATGTGCAGGAAGTGTTGCAAGGCCTTTGCTGTGAGAGGTGATTGGAGGACTCATGAGAAGAACTGTGGGAAGCTTTGGTATTGTTCTTGTGGCTCTGATTTCAAGCATAAGAGGTCTCTCAAGGATCATATCAAGGCCTTTGGGAATGGTCACAAGGCTTATGGCATTGATTCTCTTGATCAAGATGATAATGAACCTGGCTCTGAAATTGACCAAGAAAATGATCATCTTTCTAATTCTACTACTCATCATCATCATCATACTTGA 972 0.4424 MTNNPYYLNNNGYWFDLNSPSSTYVFGSNHHESPPRIEALPLLNKLSPSRSTSSRPQDLESSFGAMEVKEKHKRGDDGDESVTVALHLGLPETRSKNMTCEEEVSAASVSQEQEEGGGGGGRGSDSNSNSMNRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDSLDQDDNEPGSEIDQENDHLSNSTTHHHHHT* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0340 323 MobiDBLite consensus disorder prediction 93 134 - -
Ahy18g0340 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Ahy18g0340 323 SUPERFAMILY beta-beta-alpha zinc fingers 217 255 IPR036236 -
Ahy18g0340 323 Gene3D Classic Zinc Finger 150 173 - -
Ahy18g0340 323 Gene3D Classic Zinc Finger 232 307 - -
Ahy18g0340 323 MobiDBLite consensus disorder prediction 293 323 - -
Ahy18g0340 323 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Ahy18g0340 323 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 19 310 - -
Ahy18g0340 323 MobiDBLite consensus disorder prediction 46 65 - -
Ahy18g0340 323 PANTHER ZINC FINGER PROTEIN WIP2 19 310 IPR043584 GO:0003700|GO:0010468
Ahy18g0340 323 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0340 Ahy-Chr18 2921200 2923113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0340 82 313 C2H2 Transcription Factor Family AT3G57670 70.270 8.08e-130 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy18g0340 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0340 - - gmx:100789416 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0340 18 2921200 2923113 Ahy18g0340 18 2921200 2923113 ECH
Ahy18g0340 18 2921200 2923113 Ahy13g0561 13 5832192 5834515 ECH
Ahy16g0384 16 7460608 7462602 Ahy18g0340 18 2921200 2923113 ECH
Ahy12g1595 12 86366564 86371102 Ahy18g0340 18 2921200 2923113 ECH
Ahy18g0340 18 2921200 2923113 Ahy8g1145 8 26682389 26684302 hybridization
Ahy18g0340 18 2921200 2923113 Ahy13g0561 13 5832192 5834515 PCT
Ahy13g0561 13 5832192 5834515 Ahy18g0340 18 2921200 2923113 PCT