Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0294 ATGCACCTAAGCCCTTACAAAAAAACACACTTCAATAACAACATTCCTCATCTTCATCATCATCATCATATCCATGATGATGATGCTTCAACCATAGACATGCATAACAACACCACCACCACCAACTCAACCAGCCGGTGTTCCTCCGATTCCGGTGAGCCATGTGAGGATGGTAAATGGGCTTGCAAGCTCCTCAAGGAGTGTGCCATCGCCATCTCACAAAGAGACTCCACCAAAATCCACCACCTTTTATGGATGCTCAACGAACTCGCTTCCCCTTACGGCGACTTGGATCAGAAGCTCGCCTCTTACTTCTTGCAAGCCTTGTTCTGCAAGGCCACGGAATCCGGCCACCGTTGCTACAAGACTCTCTCAACCGTCGCTCAAAAGAGCAACAACTTCGACTCCGCCAGAAAATTGATACTCAAATTCCAAGAAGTCTCCCCTTGGACAACCTTCGGACACGTGGCAGCCAACGGAGCAATACTCGAGGCCTTGGAAGGCGAGTCCAACCTCCACATAATTGACATAAGCAACACTCTTTGCACCCAGTGGCCAACGCTGTTCGAAGCGCTGGCCACCAGGAACGACGAAACTCCTCGTCTCAGACTTACTGTGGTGGCGCTCAGCTCCGCCACAGTAAGTTCTGTGATGAAGGAGGTCGGACAGAGAATGGAGAAGTTCGCGAGACTCATGGGAGTTCCCTTTGAATTCAACGTAATCAACGGTCTCGATCGCCTCGGAGAGCTCACGAAGGAATCGTTAGGGATTACAAACGACGAAGCCATCGCCGTGAATTGCATCGGAGCGTTGAGAAGGATCGAGGTTGAAGAAAGAGAATCGGCAATTCGCATGTTCAGATCGCTTAATCCGAAGGTCGTAACCGTCGTTGAGGAAGAAGCCGATTTCAGCAGCAATCGAAACGATTTCGTTCAGTGCTTCGAAGAGTGCCTTAAATTCTACGGCTTATACTTCGAGATGTTGGAAGAGAGTTTTCCATTAACGAGCAACGAACGGTTGATGTTAGAGAGAGATTGTTCTAGAAGCATAGTTAGGGTTTTGGCTTGTGGCGGTGGTGATGAACAAAACAATAATGATCAAAATAATAATAATAATAAAGAAGAGTTTGAAGATTGTTGTGAGAGAAGAGAGAGAGGAACACAGTGGTGTGAGAAGCTGAAGAAGGAGTTTTCAGCCGCAAAGTTCAGCGATGACGTCGTTGATGATGTTAAAGCATTGCTCAAGAGATACCGTGGAGGTTGGTCACTGGTTTTGCCACAACAACAACAAGAACAAGAAGAAGGACATAATAGTAATTACAATAATAATACTCTCTCAGGAATTTACTTGACATGGAAGGAGGAACCTGTAGTTTGGGCATCAGCATGGAAACCCTAG 1398 0.4678 MHLSPYKKTHFNNNIPHLHHHHHIHDDDASTIDMHNNTTTTNSTSRCSSDSGEPCEDGKWACKLLKECAIAISQRDSTKIHHLLWMLNELASPYGDLDQKLASYFLQALFCKATESGHRCYKTLSTVAQKSNNFDSARKLILKFQEVSPWTTFGHVAANGAILEALEGESNLHIIDISNTLCTQWPTLFEALATRNDETPRLRLTVVALSSATVSSVMKEVGQRMEKFARLMGVPFEFNVINGLDRLGELTKESLGITNDEAIAVNCIGALRRIEVEERESAIRMFRSLNPKVVTVVEEEADFSSNRNDFVQCFEECLKFYGLYFEMLEESFPLTSNERLMLERDCSRSIVRVLACGGGDEQNNNDQNNNNNKEEFEDCCERRERGTQWCEKLKKEFSAAKFSDDVVDDVKALLKRYRGGWSLVLPQQQQEQEEGHNSNYNNNTLSGIYLTWKEEPVVWASAWKP* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0294 465 MobiDBLite consensus disorder prediction 33 51 - -
Ahy18g0294 465 Pfam GRAS domain family 63 464 IPR005202 -
Ahy18g0294 465 PANTHER PROTEIN SHORT-ROOT-LIKE 33 464 - -
Ahy18g0294 465 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 33 464 IPR005202 -
Ahy18g0294 465 MobiDBLite consensus disorder prediction 28 53 - -
Ahy18g0294 465 ProSiteProfiles GRAS family profile. 52 464 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0294 Ahy-Chr18 2425410 2427375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0294 57 465 GRAS Transcription Factor Family AT4G37650 49.061 3.34e-137 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ahy18g0294 GRAS 1.10E-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0294 - - ahf:112773020 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0294 18 2425410 2427375 Ahy8g1090 8 25942662 25944551 hybridization
Ahy19g1001 19 16008832 16011199 Ahy18g0294 18 2425410 2427375 PCT
Ahy9g0768 9 12170053 12172517 Ahy18g0294 18 2425410 2427375 PCT