Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0278 ATGGAAGGAGGAGGTCGAACGGTGGAAGAGATTTACGAGGATTTCAAGGGTCGAAGAGCTGCCATCATCAAAGCCCTCACAACCGATGTTCAGGATTTCTACAACCAATGCGATCCTGAGAAGGAGAATTTATGCTTATATGGATTACCTAGTGGGCAGTGGGAAGTAAATTTACCTGTTGAAGAAGTTCCACCAGAACTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAGGACTGGTTATCTTTAGTTGCTGTCCATAGCGATACATGGCTGGTTGCTCTTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTATTTAATCTGATCAATGAACTACCGACAATATTTGAAGTTGTTACCGGTTCAGCAAAAAAACAAGCTAAAGAGAAGTCCTCAGTCTCAAACAACAGTGGCAGCAAATCTAAGTCCAGCTCCAAAGCGCGGGCTTCTGAGTCGCAGGGTAGACAGTCAAAGGCATTCCAACCAAAGGATGAGGATGAAGGAGCAGAAGAGCAAGATGATGAGGAACATGGAGAAGCCTTTTGTGGGGCATGCGGCGAGAGTACCGGTACTGATGAGTTCTGGATTTGCTGCGACATCTGCGAGAAGTGGTTCCATGGTAAATGCGTGAAGATTACCCCTGCTAGGGCAGAACATATGAAGCAATACAAGTGTCCATCATGCAGTGGTAACAAGAGAGCTCGCTGA 750 0.4627 MEGGGRTVEEIYEDFKGRRAAIIKALTTDVQDFYNQCDPEKENLCLYGLPSGQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLVALAFYFGARFGFDRADRKRLFNLINELPTIFEVVTGSAKKQAKEKSSVSNNSGSKSKSSSKARASESQGRQSKAFQPKDEDEGAEEQDDEEHGEAFCGACGESTGTDEFWICCDICEKWFHGKCVKITPARAEHMKQYKCPSCSGNKRAR* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0278 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Ahy18g0278 249 MobiDBLite consensus disorder prediction 141 171 - -
Ahy18g0278 249 Pfam PHD-finger 195 243 IPR019787 -
Ahy18g0278 249 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Ahy18g0278 249 PANTHER CPG BINDING PROTEIN 1 249 IPR045104 GO:0006355|GO:0042393
Ahy18g0278 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 243 IPR013083 -
Ahy18g0278 249 SUPERFAMILY FYVE/PHD zinc finger 185 245 IPR011011 -
Ahy18g0278 249 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 249 - -
Ahy18g0278 249 CDD PHD_AL_plant 195 245 IPR044104 -
Ahy18g0278 249 SMART PHD_3 195 243 IPR001965 -
Ahy18g0278 249 MobiDBLite consensus disorder prediction 141 189 - -
Ahy18g0278 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0278 Ahy-Chr18 2311184 2314283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0278 1 249 Alfin-like Transcription Factor Family AT3G42790 72.441 1.31e-122 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Ahy18g0278 Alfin 9.80E-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0278 - - gmx:100170700 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1065 19 17593114 17598712 Ahy18g0278 18 2311184 2314283 ECH
Ahy18g0278 18 2311184 2314283 Ahy18g0278 18 2311184 2314283 ECH
Ahy18g0278 18 2311184 2314283 Ahy8g1067 8 25700662 25703944 hybridization
Ahy18g0278 18 2311184 2314283 Ahy19g1065 19 17593114 17598712 PCT
Ahy18g0278 18 2311184 2314283 Ahy9g0819 9 13503253 13507909 PCT
Ahy19g1065 19 17593114 17598712 Ahy18g0278 18 2311184 2314283 PCT
Ahy9g0819 9 13503253 13507909 Ahy18g0278 18 2311184 2314283 PCT