Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0258 ATGGAGCCTCGCATTGCCAACAAGTTCCGTCTTGGCCGCAAGCTCGGTAGCGGATCATTCGGGGAGATCTATCTCGGGACTAACGTTCAGACCAATGAAGAGGTTGCAATTAAGCTTGAAAGTATCAAAACCAAGCATCCTCAGCTGTTGTATGAATCAAAGCTGTACAAAATACTTCAAGGAGGAACTGGGATCCCAAATTTGAAATGGTTTGGTGTTGAGGGAGAATACAACGTCCTTGTTATAGATTTGCTGGGTCCTAGCCTCGAGGATTTATTCAATTTCTGTAGTCGGAAATTGTCCCTGAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGGGTTGAATTTATTCATTCCAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTATGCCATTGACTTTGGTCTTGCTAAGAAATACAGAGACAGCTCTACCCATCAGCATATTCCATATAGAGAGAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAGTCACTTGGATTTGTTCTTATGTATTTTTTGAGAGGAAGTCTTCCATGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTATGATAAAATTAGTGAGAAGAAAGTTTCTACTTCCATTGAGTCTCTCTGCCGTGGCTATCCTTCAGAATTTGCTTCATATTTCCATTACTGTCGGTCACTGCGATTTGATGATAAACCAGATTACGCTTATTTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATCTTGAAATATCAGCAATCTCAAATTGCCTCTCCTCCCGTTCGTCCTGTTGGTCTTCCTCCAGGGCCAAGTTCTGGCTTGCCACCAGCTGCTTTGAATGCTGATAGACACTCGGGTGGAGAAGATGGTAGGCATACTGGTTTGTCTTCATCAGATCCTACTCGTAGAAGGCACTCTGGACCTATTGCAAATGATGGAAACTTATCCAGACAAAAGGCCCCTGTTGCAAATGACACTACTAGATCCAAAGATGGGATGTTGTCTAGTTCTAATTTCTTTCGGTCAAGTGGATCTACAAGAAGAGTGGCTTTCTCAGGCGGTCGTGAAGCGGTAGTTGGCAGTGGTACTGAACACTCCCGTTCTCAGACCCTGGATGCAAATCCAGGAGCACTCCGGAAAATATCTGGTGCCCAGAAGAATTCACCTATCATCTCTTCTGAGCACACCCGGGCACCTTCTGGCATAGCCACATCAAACATAAGGAATTTTGAGTCAACTCTCAGAGGATTTGAGAACCTGAATCTCAATGAGGAGAGGGTAAAGTAG 1419 0.4348 MEPRIANKFRLGRKLGSGSFGEIYLGTNVQTNEEVAIKLESIKTKHPQLLYESKLYKILQGGTGIPNLKWFGVEGEYNVLVIDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIASPPVRPVGLPPGPSSGLPPAALNADRHSGGEDGRHTGLSSSDPTRRRHSGPIANDGNLSRQKAPVANDTTRSKDGMLSSSNFFRSSGSTRRVAFSGGREAVVGSGTEHSRSQTLDANPGALRKISGAQKNSPIISSEHTRAPSGIATSNIRNFESTLRGFENLNLNEERVK* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0258 472 PANTHER CASEIN KINASE-RELATED 1 448 - -
Ahy18g0258 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Ahy18g0258 472 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 448 IPR030509 GO:0004672|GO:0005524
Ahy18g0258 472 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy18g0258 472 MobiDBLite consensus disorder prediction 355 390 - -
Ahy18g0258 472 MobiDBLite consensus disorder prediction 304 390 - -
Ahy18g0258 472 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Ahy18g0258 472 SUPERFAMILY Protein kinase-like (PK-like) 6 290 IPR011009 -
Ahy18g0258 472 MobiDBLite consensus disorder prediction 328 343 - -
Ahy18g0258 472 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy18g0258 472 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy18g0258 472 CDD STKc_CK1_delta_epsilon 8 282 - -
Ahy18g0258 472 Gene3D Transferase(Phosphotransferase) domain 1 1 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0258 Ahy-Chr18 2145914 2150423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0258 7 223 EF-hand Containing Proteins AT2G17890 27.111 1.63e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Ahy18g0258 Pkinase 8.60E-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0258 K02218 - gmx:100778165 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0258 18 2145914 2150423 Ahy8g1049 8 25457093 25461711 hybridization
Ahy18g0258 18 2145914 2150423 Ahy9g0529 9 7426122 7430274 PCT