Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0249 ATGTTTTTGTGCACTAATCAAGTGTATCAACTTGCTGATTCAGCTGTTGCAGATGAAGTTTTGTCACAGGAGCATACCATAGACGGCAGAGTGGTTGAAGTGAAGAGGACTGTCCCTAGGGAGGACATGGAAGTTACTGGAGTATTCAGAACAAAGAAGATCTTTGTTGGCGGATTACCCCAGTTTTTCACTGATGATGAATTGAAGGATTACTTTTCAACTTATGGTAATATTGTTGAGTACCAAATCATGCTAGATCATAAAACTGGAAGATCTAGAGGCTTTGGATTTGTCACTTTTGACAATGAAGATTCGGTTGAAAAGGTCTTCTCGGCAGGAAAAATACATGAACTTGGAGGCAAGCAGGTTGAGATTAAGAGAGCCGAGCCTAAAAGATCAGGGAATTCATATGGTGGAATGGATGGATTTGGTGCATACAGTTCTAGAGGTCATAATCATGGAAAATGGGATGAACCGTATACTAATTTTGGCATGAACAGGCAATGTGGCCATTTCGAAGGAAGCTACGGAGGAATCTCTGCAGCATCCTACGGTGGCTATTGTGGATATGGTTATGGATTTGGATATGGTAGAATGTATGGGTCTGGTGGGTATAGATTCAATCCTTATGGCAATAGTGGTTGTGGTTATGGTGGCATGAGTATGCATGGAAGAGCAGGTCGTTTCAATCGTACTGGTAGCAATGACAATGATAGTCCTGCTGCTGCAAGATATCATCCTTACTGGAATGGATTGGTTTTACAAAATCAGGAAACCATAGAAAGGTAA 789 0.4132 MFLCTNQVYQLADSAVADEVLSQEHTIDGRVVEVKRTVPREDMEVTGVFRTKKIFVGGLPQFFTDDELKDYFSTYGNIVEYQIMLDHKTGRSRGFGFVTFDNEDSVEKVFSAGKIHELGGKQVEIKRAEPKRSGNSYGGMDGFGAYSSRGHNHGKWDEPYTNFGMNRQCGHFEGSYGGISAASYGGYCGYGYGFGYGRMYGSGGYRFNPYGNSGCGYGGMSMHGRAGRFNRTGSNDNDSPAAARYHPYWNGLVLQNQETIER* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0249 262 Gene3D - 49 233 IPR012677 -
Ahy18g0249 262 PANTHER BOULE-RELATED 12 230 IPR037366 GO:0003729
Ahy18g0249 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 130 IPR000504 GO:0003723
Ahy18g0249 262 SMART rrm1_1 53 126 IPR000504 GO:0003723
Ahy18g0249 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 122 IPR000504 GO:0003723
Ahy18g0249 262 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 12 230 - -
Ahy18g0249 262 SUPERFAMILY RNA-binding domain, RBD 51 154 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0249 Ahy-Chr18 2041713 2043049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0249 54 131 Eukaryotic Initiation Factors Gene Family AT4G34110 35.897 4.26e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0249 K12741 - gmx:100818080 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0249 18 2041713 2043049 Ahy18g0249 18 2041713 2043049 ECH