Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0242 ATGTTACAACAACACAAGAAGCAAGCATTAGCAGGAGTAGTAATTCAAGAGAACATGTCAAACTTCACTCCACCACCACCATCTCAAACTCATGGACAAGTTAATAAGAAGAAGAGAAGCCTCCCTGGTAACCCAGACCCTGATGCTGAAGTAATAGCGTTGTCACCGAAGACTCTGATGGCGACGAACAGATTCTTATGCGAGATCTGTGGGAAAGGGTTTCAGAGAGACCAGAATCTGCAGCTGCACAGAAGAGGCCACAACTTGCCGTGGAAGCTGAAGCAGAGAACGAAGACGGAGGTGGTGAGGAAGAAGGTGTACGTGTGCCCGGAGCCAACTTGCGTACACCACGATCCCGGCAGAGCACTGGGAGACCTCACCGGAATCAAGAAGCACTTCAGCAGGAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCTAAGAAGTACGCCGTTCAATCCGACTGGAAAGCTCACTCCAAAACCTGCGGCACTCGCGAGTACCGATGCGACTGCGGCACCCTCTTCTCAAGGAGGGACAGTTTTATCACGCACAGAGCGTTTTGTGATGCGCTTGCAGAAGAAAGCGCGAGAGCTGTGACAGCTGTATCTCAGTCTCAATCTCATGAAATCCATGGATTCTCACTGAAGCAAGAGCAGCAAAGTAGTTTCAGCACCATGACACCGTGGCTTGATTTCTCGTCAGTTACTACTACGACGACGACTCCAAGGTTGGATCTGGATGAACAAGTACCAAATCGAAACCCTAACCCTAGCGGTGTAATTGGACCCACAGCGCACATGTCAGCAACTGCGTTGCTTCAGAAAGCAGCGCAGATGGGTGCAACCACCACCACCACCACCGTCAGCTCATCCGCACAACACTCACAGTCACAGCTCATCAGGACCCACCCGCAGGGTCACGTGTCTGACACTTTTGGTTTGAATTTGTCCTCACGTGACGACCCTACTGCTTTCGCTCACCATGGCTTCTTCCCGCCTCCTGCTTCTTCTCCGTCTCTCCTCCACCACGTCATCAACTCTTTTGACGACGCTTTTGGCGCCAATGACGGTGCTGGCGAGGGAATGACCAGGGATTTCTTGGGGCTTAGGCCTCTCTCTCATAGCGATATCCTCACCATTGCCGGTATCAGTAACTGCATCAACTCTACTTCTTCTTCTTCCCCGCATCATCATCACCAAAAGCCATGGCAAGATGGCACATGGAGGTACAAACTTTGA 1245 0.5133 MLQQHKKQALAGVVIQENMSNFTPPPPSQTHGQVNKKKRSLPGNPDPDAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTKTEVVRKKVYVCPEPTCVHHDPGRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAVTAVSQSQSHEIHGFSLKQEQQSSFSTMTPWLDFSSVTTTTTTPRLDLDEQVPNRNPNPSGVIGPTAHMSATALLQKAAQMGATTTTTTVSSSAQHSQSQLIRTHPQGHVSDTFGLNLSSRDDPTAFAHHGFFPPPASSPSLLHHVINSFDDAFGANDGAGEGMTRDFLGLRPLSHSDILTIAGISNCINSTSSSSPHHHHQKPWQDGTWRYKL* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0242 414 MobiDBLite consensus disorder prediction 18 49 - -
Ahy18g0242 414 Gene3D Classic Zinc Finger 119 200 - -
Ahy18g0242 414 SUPERFAMILY beta-beta-alpha zinc fingers 64 162 IPR036236 -
Ahy18g0242 414 MobiDBLite consensus disorder prediction 392 414 - -
Ahy18g0242 414 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 300 - -
Ahy18g0242 414 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Ahy18g0242 414 Gene3D Classic Zinc Finger 61 88 - -
Ahy18g0242 414 MobiDBLite consensus disorder prediction 18 37 - -
Ahy18g0242 414 MobiDBLite consensus disorder prediction 400 414 - -
Ahy18g0242 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Ahy18g0242 414 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 23 300 - -
Ahy18g0242 414 SMART c2h2final6 142 162 IPR013087 -
Ahy18g0242 414 SMART c2h2final6 107 137 IPR013087 -
Ahy18g0242 414 SMART c2h2final6 65 87 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0242 Ahy-Chr18 1940169 1953536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0242 36 394 IDZ Gene Family AT1G55110 51.741 1.05e-125 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy18g0242 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0242 K25870 - gmx:100808344 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0242 18 1940169 1953536 Ahy8g1030 8 25115202 25118212 hybridization
Ahy18g0242 18 1940169 1953536 Ahy9g0489 9 6481002 6484648 PCT
Ahy9g0489 9 6481002 6484648 Ahy18g0242 18 1940169 1953536 PCT