Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0239 ATGAGCAAAAAGATCAGCACAACCTCACAGGCTTGCGCTGCTTGTAAGCACCAACGTAGGAAGTGTGGTCCTAACTGCATTCTCGCACCATATTTTCCTCACGATCGCCAAAAACAATTCCTTAACGCTCATAAATTGTTTGGAGTTGGAAGAATGACTGATCTCATCAAACCACTCGGTCCTACCGAGAGAAACATTGCCATGGAAACCATCATCTACGAATCTGAGATGCGAGCCTATGATCCTGTTAACGGTTGTTGTACAGTGATTCAACAGCTTCAATCTGAGATTGAGTACCGTCAAGCTGAGCTTCAACTTGTTCTTCATCGTCTCGCCCTCTTCAAAGCTCAAGCGCAGCAGCAATCTTCGAGTTGCAACCAAGCTAATAACGTTGAAGGAATTCCATTTCAACCGGATCAATATTATGAAGCTACTAACATGGATAGCAATAGCTCCATTACGCATGAAGTGGATCTTAATGCATGGATGATGCAAAACTTGCAATCACCTGCGTTGTTATCACCTTTGGCATTAACCAATGAGAATGAAAATGGCAATGTTGGAGTTGATGATAATAATGGCTATGTTTATGATCAGAAGCATATGCTTGACCTTGGTTTTAAAGAAACCAAATCAAATCATCAAACACCAGTGGAGGGCATGCATTATTCAGGGATGAAGCAAATTTAA 690 0.4159 MSKKISTTSQACAACKHQRRKCGPNCILAPYFPHDRQKQFLNAHKLFGVGRMTDLIKPLGPTERNIAMETIIYESEMRAYDPVNGCCTVIQQLQSEIEYRQAELQLVLHRLALFKAQAQQQSSSCNQANNVEGIPFQPDQYYEATNMDSNSSITHEVDLNAWMMQNLQSPALLSPLALTNENENGNVGVDDNNGYVYDQKHMLDLGFKETKSNHQTPVEGMHYSGMKQI* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0239 229 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Ahy18g0239 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 165 - -
Ahy18g0239 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 7 165 - -
Ahy18g0239 229 Pfam Lateral organ boundaries (LOB) domain 11 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0239 Ahy-Chr18 1918166 1919582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0239 10 136 AS2 family AT3G13850 51.724 2.04e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy18g0239 LOB 3.70E-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0239 - - adu:107461308 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0239 18 1918166 1919582 Ahy8g1027 8 25087036 25088525 hybridization
Ahy18g0239 18 1918166 1919582 Ahy9g0487 9 6457530 6459757 PCT
Ahy9g0487 9 6457530 6459757 Ahy18g0239 18 1918166 1919582 PCT