Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0219 ATGAATTTTAACTACGGAGAAAATCATGGAAAGAGCGTCGTCGCCACAAAACAAAGGAAGATCAACAAAGAGGAGGGGAGAGGCGAGTCATCCTCGATTTCCTCGTTCATATGCGAAATCTGCATTGACACTAAAATCGAAACAGAAAATTTCTCTATGACTGGTTGCAGCCACTCATATTGTACAGATTGCGTGGTGAAGTACGTTGGTTCTAAACTTGACGACAACGTGACTAATATCCGGTGTCCGGTACCCCGATGTGGTGGTTTCTTGGAACTCGACGGTTGCCACGAGGTTCTGCCAAAGATGGTTTTTGATCGGTGGGATAAGTTGTTGTGTGAAGCTGCTGTTGTTGAGAACGAGAGCGAGAGATTCATGTATTGCCCCTTCAAGGACTGCTCTGCCCTTATGATCGTCGACGATGATTCACCGACGGAATCAGAATGCCCTAGCTGTTATAGGCAGATCTGCGTCACGTGA 480 0.4646 MNFNYGENHGKSVVATKQRKINKEEGRGESSSISSFICEICIDTKIETENFSMTGCSHSYCTDCVVKYVGSKLDDNVTNIRCPVPRCGGFLELDGCHEVLPKMVFDRWDKLLCEAAVVENESERFMYCPFKDCSALMIVDDDSPTESECPSCYRQICVT* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0219 159 SUPERFAMILY RING/U-box 35 115 - -
Ahy18g0219 159 ProSiteProfiles Zinc finger RING-type profile. 38 86 IPR001841 -
Ahy18g0219 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 119 IPR013083 -
Ahy18g0219 159 ProSitePatterns Zinc finger RING-type signature. 56 65 IPR017907 -
Ahy18g0219 159 Pfam IBR domain, a half RING-finger domain 107 158 IPR002867 -
Ahy18g0219 159 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 159 IPR031127 GO:0004842|GO:0016567
Ahy18g0219 159 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 29 159 - -
Ahy18g0219 159 ProSiteProfiles TRIAD supradomain profile. 34 159 IPR044066 -
Ahy18g0219 159 Pfam Zinc finger, C3HC4 type (RING finger) 38 83 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0219 Ahy-Chr18 1750476 1750955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0219 38 154 C3H Transcription Factor Family AT2G31760 25.210 3.52e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0219 K11975 - aip:107607785 161.77