Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0193 ATGGATGAAAGCTCAAGAAATGATGACATGAAACTTGAACTCAGGCTTGCTCCACCTGGTGCTGAACAACAACAACAACACTGGGGTTTGATCAATGGCATCAGAACAACAACAAAGAGAGATGAATCTTCTGTGCTATCTCTTGGTTACTTCCCTCATGCAACCATAACCACAAAAGGTTCCCCTTCTTCTACTACTACTTCTTCTTCACAAGCAGCAGCACTACCGTTGCATAATAATGCAGACAAGAAAGTTTTCTCTCCCTCTTCTGCAAATACAGCTGTTCCCAACACTTCTCAGAAAAGAACTGCTCCAGGTCCAGTAGTGGGTTGGCCTCCAATCCGTTCATTCAGGAAGAACCTTGCAAATAGCAGCAGCTCTTCAAAGCCACCTCCTCCTCCTCCTGAGCACCATAACAAGGACTATGGTGGTGGTGGTGGAAAAGGCATGTTTGTCAAGATCAACATGGATGGTGTTCCCATTGGTAGAAAAGTTGACCTCAATGCTTACGATAGCTATGAAAATCTCTCCAATGCTGTGGACCAACTCTTCAGAGGCCTTCTTGCTGCTCAAAGAGATTCCTCTGGTGGTGGAGTTAACAAGCTACAAGAGGAAGAGAAAGTGATAACAGGTTTATTAGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTCGTATCAACAGTGAAGAGGCTGCGAGTCTTGAAGAGTTCTGAGCTTTCTGCCTTTACCCAATTGTTGGTGTTGTTTTCAGTTGGTGGTAAGCAAGAGAAAGATGCAACTTGA 834 0.4436 MDESSRNDDMKLELRLAPPGAEQQQQHWGLINGIRTTTKRDESSVLSLGYFPHATITTKGSPSSTTTSSSQAAALPLHNNADKKVFSPSSANTAVPNTSQKRTAPGPVVGWPPIRSFRKNLANSSSSSKPPPPPPEHHNKDYGGGGGKGMFVKINMDGVPIGRKVDLNAYDSYENLSNAVDQLFRGLLAAQRDSSGGGVNKLQEEEKVITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTQLLVLFSVGGKQEKDAT* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0193 277 MobiDBLite consensus disorder prediction 1 25 - -
Ahy18g0193 277 MobiDBLite consensus disorder prediction 1 15 - -
Ahy18g0193 277 Pfam AUX/IAA family 12 258 IPR033389 -
Ahy18g0193 277 Gene3D - 145 264 - -
Ahy18g0193 277 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 259 IPR003311 GO:0005634|GO:0006355
Ahy18g0193 277 MobiDBLite consensus disorder prediction 83 147 - -
Ahy18g0193 277 MobiDBLite consensus disorder prediction 83 104 - -
Ahy18g0193 277 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 259 - -
Ahy18g0193 277 ProSiteProfiles PB1 domain profile. 149 253 IPR000270 GO:0005515
Ahy18g0193 277 SUPERFAMILY CAD & PB1 domains 146 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0193 Ahy-Chr18 1511025 1513544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0193 153 266 B3 DNA Binding Superfamily AT4G23980 34.188 1.98e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ahy18g0193 AUX_IAA 7.20E-70 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0193 K14484 - gmx:100804593 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g0384 19 4552812 4559369 Ahy18g0193 18 1511025 1513544 ECH
Ahy18g0193 18 1511025 1513544 Ahy18g0193 18 1511025 1513544 ECH
Ahy18g0193 18 1511025 1513544 Ahy9g0313 9 3549954 3558773 PCT
Ahy9g0313 9 3549954 3558773 Ahy18g0193 18 1511025 1513544 PCT