Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0119 ATGGCCAAAGAAGGTCTTGGACTTGAAATCACAGAGCTAAGATTGGGTCTTCCCGGTGGGGATTCATCAGCATCGAAGAAGAGGGTGTTTTCGGAGATTGATGGTGGGGAAAATGGATCCTCGACGGAGAGGAATAATAAGAACGCGGTGGTGGGGTGGCCACCGGTGTGCTCTTACCGGAAGAAGAAGACGTCGTCGAAAATGTACGTGAAGGTTAGCATGGACGGTGCTCCATTCTTGCGTAAAATTGATCTTGCCATGCACAAGGATTACTCCCACCTAGCCTTTGCCTTGGACAACCTCTTTGCTTCCTATGGAATCGATGCGGAGAATTGTGAACAAGTTCCGATTTACGAGGACAAAGATGGTGACTGGATGCTCGTCGGAGATGTTCCTTGGGAGATGTTTATTGAATCATGCAAGCGTCTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTTGGTCTGCAACCAAAAGGATCATTAAAGGGATTTATAGAAGGCGTGAAAAATTGA 516 0.469 MAKEGLGLEITELRLGLPGGDSSASKKRVFSEIDGGENGSSTERNNKNAVVGWPPVCSYRKKKTSSKMYVKVSMDGAPFLRKIDLAMHKDYSHLAFALDNLFASYGIDAENCEQVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKGFIEGVKN* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0119 171 SUPERFAMILY CAD & PB1 domains 59 147 - -
Ahy18g0119 171 Pfam AUX/IAA family 63 154 IPR033389 -
Ahy18g0119 171 ProSiteProfiles PB1 domain profile. 67 150 IPR000270 GO:0005515
Ahy18g0119 171 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 154 IPR003311 GO:0005634|GO:0006355
Ahy18g0119 171 Gene3D - 61 159 - -
Ahy18g0119 171 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0119 Ahy-Chr18 851270 854185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0119 60 152 B3 DNA Binding Superfamily AT2G46530 32.258 6.32e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ahy18g0119 AUX_IAA 9.60E-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0119 K14484 - gmx:100811879 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0119 18 851270 854185 Ahy18g0119 18 851270 854185 ECH
Ahy18g0119 18 851270 854185 Ahy7g2191 7 80265304 80268219 hybridization