Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0088 ATGGAGATGGAGATGGAGGACTTGAATTGGAAGAAGAAGGGCACCATGTCAGTGATGGGAAGCAGGTACAAGACAGAGCTTTGCAGGAGATTCATGGCGGGTACCTGTGGGCTTGGCTCAAAATGCAGGTATGCCCATGGGCTTTCTGAGCTCAGAGGAGGATGCCCTAAAATTTGCAGAATGTTTTCTCAGTACAGAAACTGCTCCTATGGCCACACCTGTCGCTTCCTTCACTCATCATCACCAACCACCACCTCTCACTTCCTTCATCATGCTCAACCACCAGAATTCAGGCCAATGCAAACAACAAGTGCTACAAATGCCTCAAGCAGCATATTGGCAACTGATGATGATGATGATGATGATGATGATGATGATGATGAAGCACCACCATGCAGAGTGAAGTGCATTTTCAAGGATCATGAACTCCAAAGGATCAGTCGCATCTATGCAGATTGGATCTAA 465 0.4667 MEMEMEDLNWKKKGTMSVMGSRYKTELCRRFMAGTCGLGSKCRYAHGLSELRGGCPKICRMFSQYRNCSYGHTCRFLHSSSPTTTSHFLHHAQPPEFRPMQTTSATNASSSILATDDDDDDDDDDDDEAPPCRVKCIFKDHELQRISRIYADWI* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0088 154 PANTHER CCCH ZINC FINGER/TIS11-RELATED 16 153 IPR045877 GO:0003729
Ahy18g0088 154 SUPERFAMILY CCCH zinc finger 21 52 IPR036855 GO:0046872
Ahy18g0088 154 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN 16 153 - -
Ahy18g0088 154 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Ahy18g0088 154 Gene3D - 15 53 - -
Ahy18g0088 154 Gene3D - 56 81 - -
Ahy18g0088 154 MobiDBLite consensus disorder prediction 114 128 - -
Ahy18g0088 154 SUPERFAMILY CCCH zinc finger 57 81 IPR036855 GO:0046872
Ahy18g0088 154 MobiDBLite consensus disorder prediction 85 129 - -
Ahy18g0088 154 ProSiteProfiles Zinc finger C3H1-type profile. 22 49 IPR000571 GO:0046872
Ahy18g0088 154 SMART c3hfinal6 22 48 IPR000571 GO:0046872
Ahy18g0088 154 SMART c3hfinal6 55 80 IPR000571 GO:0046872
Ahy18g0088 154 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 23 47 IPR000571 GO:0046872
Ahy18g0088 154 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 57 79 IPR000571 GO:0046872
Ahy18g0088 154 MobiDBLite consensus disorder prediction 97 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0088 Ahy-Chr18 580006 580905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0088 24 81 C3H Transcription Factor Family AT1G68200 44.615 7.30e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy18g0088 zf-CCCH 1.70E-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0088 - K18753 ahf:112703739 312.768