Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0037 ATGTCTACTAGCTGGCGTTCAAGCACTGCCGTTTCATCACCGCCAATCCCAATTCCAATTCCAATTCCAATCCCCAACGAGGAGCCTTCATCATTCTCCACCTCCGTCTTCAACTTCTCCTCCGGAAACCCTAGGATCGAGGAGACCCGCGGCCTCATGCATCTCTTCCCCGACCAAGATTCCCCTTCTACCCTCCCTTTTGGACGCAAACCCCTCGTCTGCGTCGTCGGTGTCCCCAATCACATGACCTACGCCGACTTCTGCCAGTTCTGTGGTTCCTTCCTTCACCACATCCTTGAGATGCGCATTGTCAGAATGGATGGAACGGAAGATCAGTACAGCGTTTTGATCCGCTTCGACGATCAAGACTCCACCGACAGCTTCTTCAAGCATTACAATGGCCGCCGTTTCTCCTCTCTGGAGGTTGAGATTTGCCGTGTTCTTTTCACGTTGGATGTGCAGTACACTGGTTCCATTGAACATGCCCAACCATCCAATGCTACCTCCACTGAACAGCCCACATGTCCAGTTTGCCTTGAGCGGTTAGATCAAGACACCAGTGGAATTCTCACTACTATATGTAATCATTCTTTTCATTGTTCGTGCATATCAAAATGGGCTGATTCTTCTTGTCCTGTGTGCCGCTATTGCCAACAGCAAGCTGAAAAATCGATATGTTCTGTTTGTCGGACCACTGAGAACCTTTGGATATGTGTTATATGCGGATTTGTTGGCTGTGGAAGATATAAAGCAGGACATGCCATCATGCACTGGAAAGAGACACAGCATTGCTATGCCCTAGACGTGGAAACTAAGCGTGTGTGGGATTTTGCGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACCGATGGGAAGTTGGTTGAGCTGAACACTCACTGTGTTCATGCAGAGAATGGGTGTGGAAGTTGCAGCTGTGAAGATAATTCTATGAGCGAGGCGTTACTTAATAGTAAAGTTGAAGCAATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATCTTATTTTGAGTCGTTGTTACAAGAGGTAAAAGAAGAAACTGAGACAAAAATCTCTAAAGCTGTTCAGAAGGCTGTCAGTCTTAAACAACAGAAGATTCAGGCCAAGATTGACAGATGTAACAAAGAGAAGAAATTTCTGGAGGAGCTTAATGAGAATCTTGTTAAAAATGAGGATGCTTGGAAAGCAAAGTTGCTTGAGATTGAGGAGAGGGAAAGAAAATTCTTAAAACTGTCGGAGGAGAGAGTAACAAGCCTGGAAGAGCAGCTTAGATATCTCATGACTTGTCTAGATGATGCGAAGCCGGAACAACAACAGTTGCCTGAGCAAAACGAAATCAAAGATGGGCCTGTGTCTGCCTCATCAAAGGAATCCTCGTCAACTAATAACTCTCAGGTTGGCAAAAATCCATAA 1455 0.4515 MSTSWRSSTAVSSPPIPIPIPIPIPNEEPSSFSTSVFNFSSGNPRIEETRGLMHLFPDQDSPSTLPFGRKPLVCVVGVPNHMTYADFCQFCGSFLHHILEMRIVRMDGTEDQYSVLIRFDDQDSTDSFFKHYNGRRFSSLEVEICRVLFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICSVCRTTENLWICVICGFVGCGRYKAGHAIMHWKETQHCYALDVETKRVWDFAGDNYVHRLIQSKTDGKLVELNTHCVHAENGCGSCSCEDNSMSEALLNSKVEAIVNEYNELLATQLENQKSYFESLLQEVKEETETKISKAVQKAVSLKQQKIQAKIDRCNKEKKFLEELNENLVKNEDAWKAKLLEIEERERKFLKLSEERVTSLEEQLRYLMTCLDDAKPEQQQLPEQNEIKDGPVSASSKESSSTNNSQVGKNP* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0037 484 Pfam Ring finger domain 174 215 IPR001841 -
Ahy18g0037 484 CDD RING-H2_BRAP2 173 216 - -
Ahy18g0037 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 298 IPR013083 -
Ahy18g0037 484 PANTHER BRCA1-ASSOCIATED PROTEIN 26 476 - -
Ahy18g0037 484 Pfam BRCA1-associated protein 2 67 162 IPR011422 -
Ahy18g0037 484 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
Ahy18g0037 484 SUPERFAMILY RING/U-box 191 290 - -
Ahy18g0037 484 MobiDBLite consensus disorder prediction 1 23 - -
Ahy18g0037 484 Coils Coil 340 418 - -
Ahy18g0037 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 216 IPR013083 -
Ahy18g0037 484 Pfam Zn-finger in ubiquitin-hydrolases and other protein 226 285 IPR001607 GO:0008270
Ahy18g0037 484 CDD RRM_BRAP2_like 73 154 - -
Ahy18g0037 484 ProSiteProfiles Zinc finger UBP-type profile. 209 302 IPR001607 GO:0008270
Ahy18g0037 484 MobiDBLite consensus disorder prediction 448 484 - -
Ahy18g0037 484 SMART Zf_UBP_1 225 274 IPR001607 GO:0008270
Ahy18g0037 484 MobiDBLite consensus disorder prediction 451 484 - -
Ahy18g0037 484 SMART ring_2 175 214 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0037 Ahy-Chr18 275716 280995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0037 171 215 C3H Transcription Factor Family AT1G72220 48.936 2.91e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0037 K10632 - gmx:100794688 766.148