LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy18g0018	ATGAGGAAACTAAGATTTAATCTAAAGGGACTAGGGCCGCTTCCTCCGACTGGTGGGAGTGGCGGAATAAGGAGAAACGACAATGCATCAAAATCTTTTGGGGTAGGAATGAGAAGGGGATCGAATGGGCTAAGAGTACTTGGGAGATCCCTGAAAAGTGGAGTGACGTGGGCATCAGTGTTTCCGGAAGATCTTAAAGTGTCTGAGAGAAAAATATTTGACCCTCAAGACAAGACTCTTCTGCAGTGGAATAAATTCTTTCAAGTTTTGTGTATCATATCTGTATCTTTTGATCCCCTTTTCTTTTATCTCCCATATTTCAATCACAAATCATTCTGTCTCGCCATAGACAGCAGCCTGGCAAGCTATGCAGTTACACTCAGAACAATCTTCGATGCTATCTACATCCTTCGCATAAGTTTCCAGTTTCGCACTGCTTTCATTGCGCCTTCTTCTCGTGTCTTTGGACGAGGTGAACTCGTCATAGATCCTGCAGAGATTGCTAAGAGATATTTGCAACGTTACTTCATTGTTGACTTCCTCTCTGTGTTGCCTTTGCCACAGATTGTCGTGTGGAGATACCTTCATGATCCAGCGCGCACAAAGGTATTAGCTACAAAAACGCAACTGTTGAACATTGTCATCCTCCAATATTTTCCAAGATTTCTACGCTTTCTACCTTTGGCCTCAGAGATTAGCAAGACAGCAGGTGTTTTTTCGGAGAATGCTTTGGTCGGCGCCGCATATTACTTGACCTGGTACATGCTTGGCAGCCACATAACTGGGTCTGTATGGTACTTATTAGCTGTAGAACGTAATGACACGTGCTGGAGGAATGCTTGCATGGAGGAAGAGCGATGTTTCACGCATTTCTTGTACTGTGGGGGTTCAAATAAGCGTGCTACTGGCTATGAAGAATGGAGAAAGATTAGCCCAACGATTCTTAGGAATAAGTGTTCCGCTGATGATGACGACGCCCCATTTGACTATGGAATTTTCAATCAAGCAATAACATCTAATATTGTTGCATCAATCAATTTCTTTCCTAAACTATGTTATTGTTTATGGTGGGGTGTCCAAAACATAAGCACACTTGGTCAAGGGCTTCAAGCTAGCACCTACGTTGGAGAAATTCTGTTTTGTATTATATTAGCTGTTTTGGGGCTTGTCCTTTTTGCTGTTTTGATTGGAAAGATGCAGAACTTTCTTCAATCGATGTCTGTCCGTCTAGAGGAAATGAGGATCAGAAGACGTGACTCAGAGCAATGGATGCACCACCGCTTGCTTCCACCAGAGCTAAGGGAAAAAGTTAGACGCTATGATAAATGTAAATGGTTTAACACACGTGGAGTAGATGAAGAGAGTTTGGTTCAGAAACTTCCCAAAGATCTGAGGAGAGACATCAAAAGATACCTTTGTTTGAATTTGGTCAGAAGGGTTCCTCTGTTTGCCAACATGGATGAGCGGTTGCTGGATGCGATATGCGAGCGGCTGAAGCCGTGTTTGCATACAAAGGGGACGTGCATAATAAGGGAAGGGGATCCGGTGAATGAGATGCTGTTCATCGTACGTGGGCAACTTGAGAGTGTGACGACGGACGGCGGAAGAAGTGGATTCTTCAACAGAGGTTTTCTGAAAGAAGGTGACTTCTGTGGAGAAGAGCTGTTAACATGGGCACTGGACCCAAAATCATCGTCGAATTTACCGTCATCTACAAGGACTGTGAAGGCCATGGATGAAATGGAAGCATTCGCTTTGGAGGCAGAGGAGCTCAAGTTTGTTGCTTCCCAGTTCAGGCGCCTTCACAGCAGGCAGGTTCAGCACACATTCCGTTTCTACTCCCAACAGTGGCGGACTTGGGCTGCCATCTTTATCCAGGCTGCCTGGAGGCGCCACCAGAGGAGGAAAATTGCATCCCTGCACCACATCAACAAGCCTGATGATGACGACGATGATGATCAATCCCATCATGATGATGACAACGACGACGATGATGATACAAAGGCCTTGATTCCATCTTCTTCGTCTTCATCTTCTACTGCTAATACTACTACTACTGCTGCTGCTGCTACTTCTACTATGCTTATTGGGTTAGATTCGGCTATGTATGCTTCCCGGTTTGCAACTAATCTGCGTGGGCAGAGGCCCCGTTCTTCCAGTTCGGAGGGCATCAGCCTTCCCCTCCAAAAGCCTCGAGAACCCGACTTCAGCCATCTTGATGATGATGACCCACGCTAA	2238	0.454	MRKLRFNLKGLGPLPPTGGSGGIRRNDNASKSFGVGMRRGSNGLRVLGRSLKSGVTWASVFPEDLKVSERKIFDPQDKTLLQWNKFFQVLCIISVSFDPLFFYLPYFNHKSFCLAIDSSLASYAVTLRTIFDAIYILRISFQFRTAFIAPSSRVFGRGELVIDPAEIAKRYLQRYFIVDFLSVLPLPQIVVWRYLHDPARTKVLATKTQLLNIVILQYFPRFLRFLPLASEISKTAGVFSENALVGAAYYLTWYMLGSHITGSVWYLLAVERNDTCWRNACMEEERCFTHFLYCGGSNKRATGYEEWRKISPTILRNKCSADDDDAPFDYGIFNQAITSNIVASINFFPKLCYCLWWGVQNISTLGQGLQASTYVGEILFCIILAVLGLVLFAVLIGKMQNFLQSMSVRLEEMRIRRRDSEQWMHHRLLPPELREKVRRYDKCKWFNTRGVDEESLVQKLPKDLRRDIKRYLCLNLVRRVPLFANMDERLLDAICERLKPCLHTKGTCIIREGDPVNEMLFIVRGQLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSSSNLPSSTRTVKAMDEMEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRHQRRKIASLHHINKPDDDDDDDQSHHDDDNDDDDDTKALIPSSSSSSSTANTTTTAAAATSTMLIGLDSAMYASRFATNLRGQRPRSSSSEGISLPLQKPREPDFSHLDDDDPR*	746

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy18g0018	745	MobiDBLite	consensus disorder prediction	710	745	-	-
	Ahy18g0018	745	Gene3D	-	84	404	-	-
	Ahy18g0018	745	MobiDBLite	consensus disorder prediction	640	683	-	-
	Ahy18g0018	745	MobiDBLite	consensus disorder prediction	9	31	-	-
	Ahy18g0018	745	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	25	739	-	-
	Ahy18g0018	745	Gene3D	Jelly Rolls	480	600	IPR014710	-
	Ahy18g0018	745	CDD	CAP_ED	482	613	IPR000595	-
	Ahy18g0018	745	Pfam	Cyclic nucleotide-binding domain	505	592	IPR000595	-
	Ahy18g0018	745	MobiDBLite	consensus disorder prediction	711	726	-	-
	Ahy18g0018	745	Pfam	Ion transport protein	83	409	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Ahy18g0018	745	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED	25	739	-	-
	Ahy18g0018	745	SUPERFAMILY	cAMP-binding domain-like	412	602	IPR018490	-
	Ahy18g0018	745	Gene3D	Helix hairpin bin	405	473	-	-
	Ahy18g0018	745	SUPERFAMILY	Voltage-gated potassium channels	75	404	-	-
	Ahy18g0018	745	ProSiteProfiles	cAMP/cGMP binding motif profile.	482	579	IPR000595	-
	Ahy18g0018	745	SMART	cnmp_10	482	613	IPR000595	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy18g0018	Ahy-Chr18	162468	165306	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy18g0018	21	736	Ion Channels	AT1G15990	64.078	0.0	929

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy18g0018	K05391		-	gmx:100810453	1025