Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0009 ATGAATACGATGAAGAAAGGCGGTTGCCAGAAATCTTCAATATCAGGGCAGCCTTACAGTTCGCTGTATTTCAATCCGCTGAATGAAAATGGGGATGAGGATGAGGTGAGACAGAAGCGCACCCGCACGCGTAGCTGCAGCGACTACGGCCTTCGCAGCTTAGCCTCCGGCTTTGAGGACGATAGCAACAAGGAAAACAACGCCGCCATCATCAATGGCTCTTCTATTTCTCTTTCTCTGCCCGCTCCTAAGATTAGGAAGCACTTCCCATCAAAGTCCACAGACACGATCTTGAAGCCGTCGTCGCTCCAGTTGTGCATGCAGATGAACGAGCCTGAGAGGGCTTTTGGCTCTTCCAATATCTGGGACTATGCTGACTCCGACGCAGCTCCTGCGTCTTCCTGGTCCACTTTACCTAACCGCTCTTTGATCTGCAGGCCCTTGCCCATTGATATTGGAAGATGTACATGCCTTATTCTGAAGGAGCCCACTCCACAAGGCCATGGCACTCTCTATTCTCTTTATACCTATGAAGGTCAGGGACGCCAGAATAGGAAATTAGCAGTGGCCCATCACAAGCGGCGGAATGGCAAATCTCACTTCACAGTAGCTCAGAATGTAAAAGGACTCTTATCCAATTTAGATGATACTTTCCTTGGGACCATGACAGCTAACCTCATCGGCTCAAAATACCATATCTGGGATCAGGGATATCGACCTAATTCCCGCAATACGCAACCGAAATTACCTCTTGCTGTAGTGACGTATATACCAACAGTGGCAACATGTACCGGAAGTCACAGAAGCATGAGAGCATATATCCCCAAGCATCAATCTCTGTCACTGAAGAATGTCACACAGTTACAACATATTAAAGGGTTGCCATTGGATTGGGAGGAGAAATGGGACACAGTGCATCAACTATTCTCAAAGGTTCCACTTTACAACAAGATTTCAAAGCAATTTGAGCTTGACTTTAGAGATAAAGGAAAGGCAGAACTTAGAATCCAAAGATCGGTGAAAAATTTCCAGCTCACTTTAGAGGAGAATGGGAAGCAGACGATCCTGCAGCTAGGCAGGGTGGGAAAATCAAAATTCGTTATGGACTACAGATATCCACTGACAGGCTACCAAGCTTTTTGCATGTGTCTGGCTTCCATTGATACAAAGCTTTGCTGCACAGTGTAG 1188 0.4663 MNTMKKGGCQKSSISGQPYSSLYFNPLNENGDEDEVRQKRTRTRSCSDYGLRSLASGFEDDSNKENNAAIINGSSISLSLPAPKIRKHFPSKSTDTILKPSSLQLCMQMNEPERAFGSSNIWDYADSDAAPASSWSTLPNRSLICRPLPIDIGRCTCLILKEPTPQGHGTLYSLYTYEGQGRQNRKLAVAHHKRRNGKSHFTVAQNVKGLLSNLDDTFLGTMTANLIGSKYHIWDQGYRPNSRNTQPKLPLAVVTYIPTVATCTGSHRSMRAYIPKHQSLSLKNVTQLQHIKGLPLDWEEKWDTVHQLFSKVPLYNKISKQFELDFRDKGKAELRIQRSVKNFQLTLEENGKQTILQLGRVGKSKFVMDYRYPLTGYQAFCMCLASIDTKLCCTV* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0009 395 SUPERFAMILY Tubby C-terminal domain-like 132 394 IPR025659 -
Ahy18g0009 395 PANTHER TUBBY-RELATED 9 393 - -
Ahy18g0009 395 MobiDBLite consensus disorder prediction 1 41 - -
Ahy18g0009 395 PRINTS Tubby superfamily signature 351 370 IPR000007 -
Ahy18g0009 395 PRINTS Tubby superfamily signature 372 394 IPR000007 -
Ahy18g0009 395 PRINTS Tubby superfamily signature 308 325 IPR000007 -
Ahy18g0009 395 PRINTS Tubby superfamily signature 218 242 IPR000007 -
Ahy18g0009 395 Pfam Tub family 146 389 IPR000007 -
Ahy18g0009 395 MobiDBLite consensus disorder prediction 1 27 - -
Ahy18g0009 395 Gene3D Tubby Protein; Chain A 140 388 IPR025659 -
Ahy18g0009 395 PANTHER TUBBY-LIKE PROTEIN 8 9 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0009 Ahy-Chr18 111669 114191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0009 88 288 TUB Transcription Factor Family AT1G16070 54.091 8.03e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Ahy18g0009 Tub 7.30E-42 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0009 K19600 - jre:109010979 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0009 18 111669 114191 Ahy18g0009 18 111669 114191 ECH
Ahy18g0009 18 111669 114191 Ahy7g2300 7 81005298 81007819 hybridization