Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g0006 ATGGGTACGATGAGGGATCTTCTCTTGTTGTATTGCTTGTTGCATGCTGTTTCTGCACTGAACTCTGAAGGGGAGACTCTGCTTTCACTCTTGAGGAAGTGGACATGGGTGCCTCCTTCCATAAACTCCAGCTGGCAATGGCAGCATGCCTCTCCGTCTCCATGCTCGTGGGCAGGAGTTCAATGTGACCATCATGCCCAGCACGTCGTCTCTCTTAACCTTGCTGGCTTCGGGATTGCCGGTCGCTTAGCACCTGAAATCGGGAATCTCACTCAGTTGCACCGTTTGGACCTTGCTGCAAACTCGCTCCACGGCCCAATACCTGATACCTTGAAAAACTTGCGCAACTTAAGGTACATAAGCCTTGCTGATAATTTATTCACAGGCCATTTTCCAGCTTCCTTGACTCAACTCTCACAGCTACAAATTGTTCACCTCTCTGACAACAATCTAAACGGTTCCGTCCCCATAAGTATTGGGAACATGACTCAGCTCAAGATCCTGTATCTTCAGGATAACCAATTATCTGGGACAGTTCCCTCATCCATTGGCAACTGCAGCAAACTACAAGAGTTGTTTTTGAATCGGAATCTGTTGCAAGGTGTTCTGCCTCAGAGTCTAAACAACCTCCATGATCTTGCTTATTTTGGTGCTGCCAGCAACAGCCTTACTGGTGCCATTCCATTTCCAGTGGGCTCTTGTAACAATTTAGGGTTTCTGGATCTATCATATAATGTGTTTAGTGGAGGCATTCCCTCTGGCTTGGGGAACTGTAGTGGTTTATCAAAATTGGCTCTTGTCAACTGTAACTTAGTCGGAAGGATTCCATCCTCCTTTGGTTTACTGACCCATCTTTCTTTTCTACATCTTTCTAATAACCGCTTATCCGGAACAATACCTTCCGAAATGGGACACTGCAAGTCTTTGATAGAGTTGCAACTGTATTCCAATCAACTGGAGGGAAATATCCCAAGTGATCTTGGGAATTTGAGTAAACTCAAGGACCTTGAGTTGTTTTCCAATCGATTAAGTGGCGAAATTCCACTGAGCATTTGGAAGATTCAGGGTTTGCAGAATGTCCATGTGTATAACAATCACCTCTCTGGTGAGCTACCTTTGGAAATGACAGAGCTCAAGCACCTGAAGAACATCTCATTGTTCAACAACCGCTTCTCTGGAGTCATACCTCGAAACTTGGGAATTAATAGCAGTTTAGTCCAGCTGGACTTTACAAATAATAGGTTCACCGGCAACATCCCACCAAATCTCTGTTTTGGCAAGAAATTGAGCTTGCTGACTCTAGGCATCAATCAACTTCAAGGTAGCATGCCTCCTGGTTTGGGAAGTTGTACAACTCTTACGAGAATGATTCTCAAACAAAATGCTCTCACTGGGCCTCTTCCTGATTTCGAAAGCAATCCAAATCTCACATATATGGATATCAGCAATAACAGAATTGATGGAGCAATTCCACCCAGTTTGGGAAACTGCAGAAATCTCACCACCTTAATTTTGTCTGCGAACAAATTTTCGGGGCTTATACCTCCGCAACTTGGAAAGCTTGTGAATCTCCGAACCTTGGATCTTGCTCACAACAACTTAGAAGGCTCTGTGCCATCTCAGCTGTCAAATTGTGCCAAAATGGACAAGTTTGATGTGGGATTCAACTCCCTAAATGGTTCATTGTCATCAAGGTTGCAGAGCTGGACAGGGCTAAGCACATTGATTTTGAGAGAGAATCATTTTAGTGGAGGCATCCCATCTTTCATTTCAGAATTTAAAAAGCTTTCTGAATTGCAGCTTGGTGGTAATATGCTTGGAGGCAGAATTCCTGGATCTATTGGAGCATTGCAGAATTTGATCTATGGGTTGAATCTAAGTTCCAATTGGCTGATAGATGGCATTCCCGTGGAGATTGGAAAACTGAAAAAATTGCAAATATTGGATCTATCTCGGAACAAGTTGACAGGAAGCATACAAGTTCTTGATGAACTCGCCTCATTAGTTGAAATCAACATTTCATACAACTCTTTTCATGGTCCTGTGCCGAAGATGCTAGTGAAGTTGTTAAATTCTTCATTGCCATCATTTTTGGGCAATCCTGGACTGTGTATTAGTTGTTCAATGCGGGATGGCCTGGCTTGCACTAAAAGCAAGTACCTGAAGCCATGCGATAACAAATCACCTAAGCGGAAAGGCCTTAGTAAAGTTGAAATAGTGTTGACAGCAATTGGATCATCCATTTTTGTCATCTTAGCGCTTTATGCGTTTGCTTTTGCTGGGAAGTCAAAGCATGGAGTCAATAATAACAATATTATCTGTGGAGAGGAGGGGTCTTCCTCCTTACTTAACAAAGTCATGGAGGCTACAGACAACCTAAGTGAACGGTTTGTCATTGGCAGAGGAGCCCATGGAGTTGTCTACAAAGCCCTGGTGGGTCCCGACCAGGCTTTTGCAGTGAAGAAGTTGGGATTTGGTACAAGCAGATTTAAGAAGTTGAGCATGGTGACAGAGATCCAAACCCTCGGAAGAATTAGGCATCGAAATCTGGTGAAAGTAGAAGACTTTTGGTTGAGAAAAGACTTTGGGCTAATCTTGTACAGGTACATGCCAAATGGGAGCCTCCATGATGTGTTGCATGAAAAGAATCCAAGGCCAGTTGTCTTAGAGTGGAGGGTGCGGTATAAGATAGCTGTTGGGGTTTCTCATGGACTGGCTTATCTCCATTATGATTGTGATCCTCCCATAGTACACCGAGACATCAAGCCAAAGAATATACTTCTGGACTCTGATATGGAGCCTCATATCGCTGACTTTGGCATTGCCAAACTGTTGTCGGTATTGACAGAGAAATCGCCTTCATCATTGTCGTCGTCTCTCCCCCTTGGCACAATTGGTTATATTGCACCAGAGAATGCATATGCAACAACAGCTAGTAGGGAGTCAGACGTGTATAGTTACGGGGTAGTCTTGCTTGAACTCCTAACCAGAAAGAAGGCAGCGGATGATGGTGATTTGGTGGGTTGGGTTGGATCCCTCTGGAGAGAAACAGCAGAAATTGGCCAAATTGTGGATCCAGGGCTTGCACAAGAATTCATTGACACCCACATAATGGAGCAAGTTACCAAAGTGCTTATGGTGGCTCTGAGATGCACTGAGCAGGATCCCCACAACAGACCCCCAATGACACTTGTTACCAAGCTCTTATCAGATGCAAATCCACCAACAACTAATACTAATCCTAAGGGCTAG 3252 0.4413 MGTMRDLLLLYCLLHAVSALNSEGETLLSLLRKWTWVPPSINSSWQWQHASPSPCSWAGVQCDHHAQHVVSLNLAGFGIAGRLAPEIGNLTQLHRLDLAANSLHGPIPDTLKNLRNLRYISLADNLFTGHFPASLTQLSQLQIVHLSDNNLNGSVPISIGNMTQLKILYLQDNQLSGTVPSSIGNCSKLQELFLNRNLLQGVLPQSLNNLHDLAYFGAASNSLTGAIPFPVGSCNNLGFLDLSYNVFSGGIPSGLGNCSGLSKLALVNCNLVGRIPSSFGLLTHLSFLHLSNNRLSGTIPSEMGHCKSLIELQLYSNQLEGNIPSDLGNLSKLKDLELFSNRLSGEIPLSIWKIQGLQNVHVYNNHLSGELPLEMTELKHLKNISLFNNRFSGVIPRNLGINSSLVQLDFTNNRFTGNIPPNLCFGKKLSLLTLGINQLQGSMPPGLGSCTTLTRMILKQNALTGPLPDFESNPNLTYMDISNNRIDGAIPPSLGNCRNLTTLILSANKFSGLIPPQLGKLVNLRTLDLAHNNLEGSVPSQLSNCAKMDKFDVGFNSLNGSLSSRLQSWTGLSTLILRENHFSGGIPSFISEFKKLSELQLGGNMLGGRIPGSIGALQNLIYGLNLSSNWLIDGIPVEIGKLKKLQILDLSRNKLTGSIQVLDELASLVEINISYNSFHGPVPKMLVKLLNSSLPSFLGNPGLCISCSMRDGLACTKSKYLKPCDNKSPKRKGLSKVEIVLTAIGSSIFVILALYAFAFAGKSKHGVNNNNIICGEEGSSSLLNKVMEATDNLSERFVIGRGAHGVVYKALVGPDQAFAVKKLGFGTSRFKKLSMVTEIQTLGRIRHRNLVKVEDFWLRKDFGLILYRYMPNGSLHDVLHEKNPRPVVLEWRVRYKIAVGVSHGLAYLHYDCDPPIVHRDIKPKNILLDSDMEPHIADFGIAKLLSVLTEKSPSSLSSSLPLGTIGYIAPENAYATTASRESDVYSYGVVLLELLTRKKAADDGDLVGWVGSLWRETAEIGQIVDPGLAQEFIDTHIMEQVTKVLMVALRCTEQDPHNRPPMTLVTKLLSDANPPTTNTNPKG* 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g0006 1083 ProSiteProfiles Leucine-rich repeat profile. 644 666 IPR001611 GO:0005515
Ahy18g0006 1083 ProSiteProfiles Protein kinase domain profile. 793 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy18g0006 1083 SMART serkin_6 793 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy18g0006 1083 Pfam Protein kinase domain 798 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy18g0006 1083 ProSitePatterns Protein kinases ATP-binding region signature. 799 822 IPR017441 GO:0005524
Ahy18g0006 1083 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515
Ahy18g0006 1083 Pfam Leucine rich repeat 498 558 IPR001611 GO:0005515
Ahy18g0006 1083 Pfam Leucine rich repeat 164 223 IPR001611 GO:0005515
Ahy18g0006 1083 Pfam Leucine rich repeat N-terminal domain 21 63 IPR013210 -
Ahy18g0006 1083 Gene3D Ribonuclease Inhibitor 287 446 IPR032675 -
Ahy18g0006 1083 PANTHER OS08G0446200 PROTEIN 7 156 - -
Ahy18g0006 1083 Gene3D Phosphorylase Kinase; domain 1 758 869 - -
Ahy18g0006 1083 Gene3D Transferase(Phosphotransferase) domain 1 870 1080 - -
Ahy18g0006 1083 PANTHER OS08G0446200 PROTEIN 159 1074 - -
Ahy18g0006 1083 Gene3D Ribonuclease Inhibitor 19 176 IPR032675 -
Ahy18g0006 1083 Pfam Leucine Rich Repeat 475 497 IPR001611 GO:0005515
Ahy18g0006 1083 SUPERFAMILY Protein kinase-like (PK-like) 783 1069 IPR011009 -
Ahy18g0006 1083 SUPERFAMILY L domain-like 378 711 - -
Ahy18g0006 1083 Gene3D Ribonuclease Inhibitor 447 728 IPR032675 -
Ahy18g0006 1083 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 159 1074 - -
Ahy18g0006 1083 SMART LRR_sd22_2 521 547 - -
Ahy18g0006 1083 SMART LRR_sd22_2 642 664 - -
Ahy18g0006 1083 SMART LRR_sd22_2 330 359 - -
Ahy18g0006 1083 SMART LRR_sd22_2 162 188 - -
Ahy18g0006 1083 SMART LRR_sd22_2 90 116 - -
Ahy18g0006 1083 PRINTS Leucine-rich repeat signature 642 655 - -
Ahy18g0006 1083 PRINTS Leucine-rich repeat signature 524 537 - -
Ahy18g0006 1083 ProSitePatterns Serine/Threonine protein kinases active-site signature. 916 928 IPR008271 GO:0004672|GO:0006468
Ahy18g0006 1083 Gene3D Ribonuclease Inhibitor 177 279 IPR032675 -
Ahy18g0006 1083 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 7 156 - -
Ahy18g0006 1083 SUPERFAMILY L domain-like 34 393 - -
Ahy18g0006 1083 SMART LRR_typ_2 187 209 IPR003591 -
Ahy18g0006 1083 SMART LRR_typ_2 162 186 IPR003591 -
Ahy18g0006 1083 SMART LRR_typ_2 521 545 IPR003591 -
Ahy18g0006 1083 SMART LRR_typ_2 90 113 IPR003591 -
Ahy18g0006 1083 SMART LRR_typ_2 282 306 IPR003591 -
Ahy18g0006 1083 SMART LRR_typ_2 138 161 IPR003591 -
Ahy18g0006 1083 SMART LRR_typ_2 474 497 IPR003591 -
Ahy18g0006 1083 SMART LRR_typ_2 642 669 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g0006 Ahy-Chr18 73639 77967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g0006 16 1072 Receptor kinase-like Gene Family AT1G73080 50.456 0.0 1004
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ahy18g0006 Pkinase 3.20E-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g0006 - - gmx:100778035 1439.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0006 18 73639 77967 Ahy18g0006 18 73639 77967 ECH
Ahy18g0006 18 73639 77967 Ahy7g2303 7 81041517 81045848 hybridization