Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3235 ATGGTGCTGAAAAAGGAGGTAAGAAGAATATCGGGTGGGAAAAGTGAAAAGAGATGGAAGGGCCGCGGAAAGACGGAGGCGGTGTTGGGCAGACTTTGGAAAATCTTGTTTGTTTGTGTTAATATAAATAGAGGCAGTCTGACTAGAGTTGGACCCCACTCTGAAATGAGCTGCAACGGTTGCCGGGTGCTCCGCAAGGGATGCAGCGACATGTGCCCCCTGAGGACATGCCTCCACTGGATTCCATCCCCTCAGGCACAAGCTCACGCCACTCTCTTCCTCGCTAAGTTCTTTGGCCGCTCCGATCTCTTCTCCTTCATTTCCTCTGTCCCACACAACAACAGGCCCGAGTTGTTTCAGTCTCTGCTTTATGAAGCTTGCGGACGAACCATCAATCCCGTCAATGGCGCCGTGGGCCTGCTCTCCACTGGTAACTGGCACCTCTGCGAGGCTGCCCTCCGCACTGTCCTTACCGGCGGCGTCCTCACCGCGTTGCCGGAGGAGGTCATCATGCCAGTCTTGGACGACTCTTCCGCTTCTCATGCTGCTCTTCATTTCAACAACACAAGCTTATCAGAGGCGTCCAAGAGGCGTAGCGTTAGCGGTGTTTCAACGCCACCCGCTGTGTCAGTTGTTTCGGGAGAACCATCGGAGATGAGCTTTGATGATGGCATTTGCAGTCACAACCAGAGAAAACTCTTGAATCTTTTCGTGTAA 717 0.5314 MVLKKEVRRISGGKSEKRWKGRGKTEAVLGRLWKILFVCVNINRGSLTRVGPHSEMSCNGCRVLRKGCSDMCPLRTCLHWIPSPQAQAHATLFLAKFFGRSDLFSFISSVPHNNRPELFQSLLYEACGRTINPVNGAVGLLSTGNWHLCEAALRTVLTGGVLTALPEEVIMPVLDDSSASHAALHFNNTSLSEASKRRSVSGVSTPPAVSVVSGEPSEMSFDDGICSHNQRKLLNLFV* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3235 238 MobiDBLite consensus disorder prediction 196 211 - -
Ahy17g3235 238 Pfam Lateral organ boundaries (LOB) domain 57 153 IPR004883 -
Ahy17g3235 238 MobiDBLite consensus disorder prediction 196 215 - -
Ahy17g3235 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN 56 199 - -
Ahy17g3235 238 ProSiteProfiles LOB domain profile. 56 162 IPR004883 -
Ahy17g3235 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 56 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3235 Ahy-Chr17 134446241 134447330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3235 56 167 AS2 family AT3G49940 71.429 4.20e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy17g3235 LOB 1.30E-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3235 17 134446241 134447330 Ahy15g0572 15 7122766 7124358 ECH
Ahy17g3235 17 134446241 134447330 Ahy11g1131 11 33018008 33019404 ECH
Ahy17g3235 17 134446241 134447330 Ahy19g3330 19 156313470 156314255 ECH
Ahy17g3235 17 134446241 134447330 Ahy17g3235 17 134446241 134447330 ECH