Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3234 ATGGCACTAGAAGCTCTAAAATCCCCCACCGCTGCAGGACCTTCCTTCAGCTTTGAAGAAACCAATAATCTCAGCTACTTGGAAGCACCATGGGCTAAGAGAAAGCGTTCGAAGCGTGCCAACAGAATGGAACTGCCCCAAAACTGCTCGGAGGAAGAGTACCTAGCTCTCTGCCTCATCATGCTTGCTCGCGGCACCACCACCGTCCCCACAATCACAGCCACCGCCACTGCCATCCCATCCAAGCCCCACTCCTCTCCTGCTCCATCTGTTGATGAGTCGGCTCCAATTTCAACCGCCAATCTCATCTACAAGTGCTCTGTCTGCAACAAAGCTTTCTCATCTTATCAGGCGCTCGGTGGACACAAGGCCAGCCACCGCAAGTTCGCTGCTGCCACCGTTGGCGGCGAAGACCATCACTCAACCTCCTCTGCCGTCACCACCAGTTCCGTTTCCAAAGCATCCAACGGCGGAGGCAAGGCTCACGAGTGTTCCATCTGCCATAAGTCTTTTCCAACGGGACAGGCTTTGGGAGGACACAAGCGTTGCCACTACGATGGCGGCGCTGCTGCATCTGCATCGGCCGCTGCTGGTAGTGCCGTTACCGCTTCAGAAGGGGTTGGGTCTACTCACACTGTTAGCCATCGCGACTTCGATCTCAACCTGCCTGCTTTTCCAGATTTGTCCAACAAGTTCTTCGTGGAGGACGAGGTTTCCAGCCCTCTGCCGGTGAAGAAGCCCCGTCTCTTGACCCTACCGAAGATTGAAATCCCTCAATTCCATTGA 786 0.5496 MALEALKSPTAAGPSFSFEETNNLSYLEAPWAKRKRSKRANRMELPQNCSEEEYLALCLIMLARGTTTVPTITATATAIPSKPHSSPAPSVDESAPISTANLIYKCSVCNKAFSSYQALGGHKASHRKFAAATVGGEDHHSTSSAVTTSSVSKASNGGGKAHECSICHKSFPTGQALGGHKRCHYDGGAAASASAAAGSAVTASEGVGSTHTVSHRDFDLNLPAFPDLSNKFFVEDEVSSPLPVKKPRLLTLPKIEIPQFH* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3234 261 SUPERFAMILY beta-beta-alpha zinc fingers 103 184 IPR036236 -
Ahy17g3234 261 MobiDBLite consensus disorder prediction 137 156 - -
Ahy17g3234 261 SMART c2h2final6 162 184 IPR013087 -
Ahy17g3234 261 SMART c2h2final6 104 126 IPR013087 -
Ahy17g3234 261 Gene3D Classic Zinc Finger 103 184 - -
Ahy17g3234 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 184 IPR013087 -
Ahy17g3234 261 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Ahy17g3234 261 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 253 IPR044653 GO:0003700
Ahy17g3234 261 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Ahy17g3234 261 MobiDBLite consensus disorder prediction 135 157 - -
Ahy17g3234 261 Pfam C2H2-type zinc finger 161 186 - -
Ahy17g3234 261 Pfam C2H2-type zinc finger 104 128 - -
Ahy17g3234 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 126 IPR013087 -
Ahy17g3234 261 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3234 Ahy-Chr17 134433190 134434347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3234 1 257 C2H2 Transcription Factor Family AT1G27730 45.594 6.96e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy17g3234 zf-C2H2_6 5.60E-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3234 - - aip:107606374 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3234 17 134433190 134434347 Ahy17g3234 17 134433190 134434347 ECH
Ahy17g3234 17 134433190 134434347 Ahy8g0948 8 18291699 18292835 hybridization