Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3228 ATGGAAACGGATATTCCGGTGGCCAATTACACTTACATGGGCAGGACTTTCACTCAACTCGCCCTCGCTGACCATTCCTCTTCCGCTTTCAGCGACTGCAACAGCGACAGATCTGGCGAGTTCCCCACCACTTCCTCACAAGCTCGCCGCCTCCTTATTGCCTGCGCCGCCGACAACTCCGATGACCTCATCACCCACCTCGTCACCGAACTCCAATCCTCTTCCATTGAAGACCAAAAACAAGCTGCCATGGAGATCAGACTTCTCGCCAAGAACAAGCCCGAAAACCGCCTCAAGATCGCCAAAGCTGGCGCCATCAAACCTTTAATCTCCCTCGTTTCATCTCAGGACCTTCAGCTTCAGGAATACGGCGTCACCGCCATTCTCAACCTCTCCCTCTGCGACGACAACAAAGACGCCATCGCTTCTTCTGGAGCCATTAAGCCCCTTGTTCGTGCACTCAAGACGGGTACTCCAGCGGCCAAAGAGAACGCCGCCTGCGCTCTCCTTCGTCTCTCGCAGGTGGAAGAGAACAAGCTGGCGATAGGGAGGTGCGGGGCGATTCCGCCGCTGGTAAGCCTTTTAGAAAGCGGAGGTTTACGAGCTAAGAAGGACGCGTCGACGGCGCTGTACTCGCTGTGCTCGTCAGTGAAGGAGAACAAGATCAGGGCAGTCAAGGCCGGGATCATGAAAGTGCTGGTGGAGCTCATGGCAGACTTCAGTGGGAATATGGTGGACAAGTCAGCTTACGTGGCAAGCGTTTTGGTTTCGGTAATGGAGGCAAGGGCAACGCTGGTGGAGGAAGGAGGGATACCGGTGTTAGTGGAGATGGTGGAGGTTGGGACGCAGAGGCAGAAGGAAATCGCGGCGGTTATTCTGTTACAGGTGTGCCAAGACTGCGTGATTTACCGTACGATGGTGGCGCGCGAAGGTGCGATTCCTCCTCTGGTTGCTCTGTCGCAGAACGGCACCAACCGCGCCAAGCAAAAGGCGGAGACACTGATAGAACTTCTACGGCAACCAAGATCCGGCAACGGCGCTGCTCCTCGTACATCATCATAA 1062 0.5556 METDIPVANYTYMGRTFTQLALADHSSSAFSDCNSDRSGEFPTTSSQARRLLIACAADNSDDLITHLVTELQSSSIEDQKQAAMEIRLLAKNKPENRLKIAKAGAIKPLISLVSSQDLQLQEYGVTAILNLSLCDDNKDAIASSGAIKPLVRALKTGTPAAKENAACALLRLSQVEENKLAIGRCGAIPPLVSLLESGGLRAKKDASTALYSLCSSVKENKIRAVKAGIMKVLVELMADFSGNMVDKSAYVASVLVSVMEARATLVEEGGIPVLVEMVEVGTQRQKEIAAVILLQVCQDCVIYRTMVAREGAIPPLVALSQNGTNRAKQKAETLIELLRQPRSGNGAAPRTSS* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3228 353 Pfam Armadillo/beta-catenin-like repeat 177 215 IPR000225 GO:0005515
Ahy17g3228 353 Pfam Armadillo/beta-catenin-like repeat 94 132 IPR000225 GO:0005515
Ahy17g3228 353 Pfam Armadillo/beta-catenin-like repeat 135 173 IPR000225 GO:0005515
Ahy17g3228 353 SUPERFAMILY ARM repeat 60 335 IPR016024 -
Ahy17g3228 353 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 1 347 - -
Ahy17g3228 353 SMART arm_5 93 133 IPR000225 GO:0005515
Ahy17g3228 353 SMART arm_5 175 215 IPR000225 GO:0005515
Ahy17g3228 353 SMART arm_5 134 174 IPR000225 GO:0005515
Ahy17g3228 353 SMART arm_5 216 257 IPR000225 GO:0005515
Ahy17g3228 353 SMART arm_5 258 298 IPR000225 GO:0005515
Ahy17g3228 353 SMART arm_5 300 340 IPR000225 GO:0005515
Ahy17g3228 353 Gene3D - 42 198 IPR011989 -
Ahy17g3228 353 Gene3D - 202 343 IPR011989 -
Ahy17g3228 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 104 146 IPR000225 GO:0005515
Ahy17g3228 353 PANTHER U BOX DOMAIN-CONTAINING 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3228 Ahy-Chr17 134359770 134362365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3228 28 345 U-box Gene Family AT2G23140 46.646 1.25e-81 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3228 - - gmx:100797550 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3228 17 134359770 134362365 Ahy8g0943 8 18161389 18163579 hybridization