Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3226 ATGAAGAATAGAACCAGAAACATGGACGATCTGTCTTCGTGCAACCTTCTTTGTGAGGAAGAAGAAACATTTTTGGAATTGGAAAGAGATGAAGAATACTCTGCCTTTCAATCAGGAATGGATCATCAAGGTGTTTCAGAGAATGAGGATTTGGGGGTTCTGCTTGAGAGAGAGATCCGTATTGGGTTCCGAAAAGATGAGACTTTTGTGTTTGAGGATTGGATGAAACGTTCCCGCACAGATGCAATCAATTGGATTCTCAAAACAAGAGCAACATTGGGATTTCGCTTTCAAACGGCTTATTTGTCTGTCACATATTTCGATCGGTTCCTTTCCAAGCGGTCCATTGATAGTGAAAAGGAGTGGGCAATCCGATTACTATCAATTGCATGCCTTTCTTTGGCTTCAAAGATGGAAGAATGCAGTGTGCCTGAGCTATCAGTGTTTCAGTCAAAAGATTACTGCTTTGAGAGCAAAGTGATTAGGAGAATGGAGATTTTGGTGCTAACCACATTGGATTGGAATATGAGCATTATAACCCCCTATGATTTCCTTCCTTATTTCATTACAAAGTTCTGCAATCAACCCCCACCAACTACCACTTTTTCCAAGACCATGCAACTCATCTTCACCACAATCAAAGAGGTGAGCATAATGGATCACAAACCATCTGTTGTTGCAGCTGCAGCTACTTTGGTGTCATTGGATCAGCAACTAACCATAGAAGCTGTAGAGTTGAAGATTAGTTCAATTCCTCAACATAGGTTTCTTGATCCTAAAGATGTATTTTCCTGCTACAATCTAATTCAAAGATTACAAGAGGAGAATAATACAAGAAGAGACAATAACGTTTTGCATACGCCTAGTCCTTCAACAATTGACATGATAGAGAGCTCTCTAATTACTTCTTCTGCTGCTGTCACAAAGAGGAGAAGACTCTCATTTAATGATGATCAAAGTTCTGAAGGGAAGGGACTTGACTAG 984 0.4004 MKNRTRNMDDLSSCNLLCEEEETFLELERDEEYSAFQSGMDHQGVSENEDLGVLLEREIRIGFRKDETFVFEDWMKRSRTDAINWILKTRATLGFRFQTAYLSVTYFDRFLSKRSIDSEKEWAIRLLSIACLSLASKMEECSVPELSVFQSKDYCFESKVIRRMEILVLTTLDWNMSIITPYDFLPYFITKFCNQPPPTTTFSKTMQLIFTTIKEVSIMDHKPSVVAAAATLVSLDQQLTIEAVELKISSIPQHRFLDPKDVFSCYNLIQRLQEENNTRRDNNVLHTPSPSTIDMIESSLITSSAAVTKRRRLSFNDDQSSEGKGLD* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3226 327 CDD CYCLIN 78 169 IPR013763 -
Ahy17g3226 327 SUPERFAMILY Cyclin-like 162 273 IPR036915 -
Ahy17g3226 327 SUPERFAMILY Cyclin-like 48 176 IPR036915 -
Ahy17g3226 327 SMART Cyclin_C_2 179 304 IPR004367 -
Ahy17g3226 327 Pfam Cyclin, C-terminal domain 179 292 IPR004367 -
Ahy17g3226 327 PANTHER CYCLINS 50 311 IPR039361 -
Ahy17g3226 327 Gene3D - 72 177 - -
Ahy17g3226 327 Gene3D - 178 240 - -
Ahy17g3226 327 PANTHER CYCLIN-D5-1 50 311 - -
Ahy17g3226 327 ProSitePatterns Cyclins signature. 79 110 IPR006671 -
Ahy17g3226 327 SMART cyclin_7 84 170 IPR013763 -
Ahy17g3226 327 Pfam Cyclin, N-terminal domain 76 177 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3226 Ahy-Chr17 134341572 134343721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3226 78 277 Core Cell Cycle Gene Families AT1G70210 39.234 6.45e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3226 K18811 - gmx:100798728 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3226 17 134341572 134343721 Ahy8g0940 8 18106917 18109025 hybridization