Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3208 ATGACCATGCAAGAAACAATGCCTACTCCTCCTCCTCTGAAGGTGCTGATTGAAGAGATGGAGTCATCAATGGAAGATGTTCCTTCGGTTTTCATCTGTCCCATCTCGCTGGAGCCAATGAGAGACCCAGTCACACTCTGCACCGGCCAAACCTACGACAGGTCCAACATCCTCAAATGGTTGTCCCTCGGCCACAACACTTGTCCTACCACCATGCAAGACCTTTGGGACCTTTCCCTCACCCCCAACACCACCCTCCACCGCTTCATCCTCACATGGTTCTCTCACAACTATTTCTCCATCAACAAAAGCCTCCAAGACGTTCAAGGCACAGCCTTTCACCTCTTGGAATCACTCAACAAGGTTAAGGGTCAAGCAAGAGTTAAATCCCTCAAGGAACTTCGCCACCTCCTTGATTCTCACGCTTCAATAAGGAAGACAGTTGTGGAACACAACGGACTTGCCTTGGTTTCTTCCTTGTTAGGTCCTTTCACTTCCCATGCTGTTGGGTCAGAAGCCGTTGGGATACTCGTGAAGCTGGACTTGAGTTCAGAGGTTAAGAAGAATCTGATGCATCCATCAAAAGTATCGTTATTGGTGGATATCATGAACGAGGGAACCATTGAAACAAAGATGAACTGTGCAAAGTTGATTGAGATATTGTTGTTAGAAGGACACGTGTCAAGCCTGAGTCTGTTGGTTGGTTTGTTGAGGTTAGTTAGAGACAAGAAACACCCAACTGGGGTGGTCTTGAACGGCCTCATACTGATCAAGATGATGTGCAGTTCCCAAGAATCAGTTAGAACTTCCATTGTGAGAATCGGAGCGGTGCCGCAACTGGTGGATCTATTGCCAACACTAAACGATGAGTGCTTGGAAATAGCGCTGTTTATTCTCGAGGTGGTGTCGACGATTCCAGAAGGAAGAATGGCGTTGAAAGATTGTCCCAATGCTGTGCTTAATGTGGTGAAGTTGTTGATGAGAGTCTCTGAGAGGTGCAAGCTATTTGCGCTTTCGATATTGTGGGCTATTTACAAGCTTGCGCCGGAACAATGTGCCTCCGAGGCCGTGGAGGCTGGGTTGGCGGCGAAGCTGCTTCTGGTGATTCAGAGCGGTTGCAACCCTGTTTTGAAGCACATGTCTGCTGAGTTCTTGAAATTGTGCAGTTTGAATTACTCTGCTAGTATCTTCATCTCTAAGTGTATGCTTACCACAACAATACAATGA 1227 0.4719 MTMQETMPTPPPLKVLIEEMESSMEDVPSVFICPISLEPMRDPVTLCTGQTYDRSNILKWLSLGHNTCPTTMQDLWDLSLTPNTTLHRFILTWFSHNYFSINKSLQDVQGTAFHLLESLNKVKGQARVKSLKELRHLLDSHASIRKTVVEHNGLALVSSLLGPFTSHAVGSEAVGILVKLDLSSEVKKNLMHPSKVSLLVDIMNEGTIETKMNCAKLIEILLLEGHVSSLSLLVGLLRLVRDKKHPTGVVLNGLILIKMMCSSQESVRTSIVRIGAVPQLVDLLPTLNDECLEIALFILEVVSTIPEGRMALKDCPNAVLNVVKLLMRVSERCKLFALSILWAIYKLAPEQCASEAVEAGLAAKLLLVIQSGCNPVLKHMSAEFLKLCSLNYSASIFISKCMLTTTIQ* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3208 408 Gene3D - 113 393 IPR011989 -
Ahy17g3208 408 CDD RING-Ubox_PUB 31 73 IPR045210 -
Ahy17g3208 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 107 IPR013083 -
Ahy17g3208 408 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Ahy17g3208 408 Pfam U-box domain 27 97 IPR003613 GO:0004842|GO:0016567
Ahy17g3208 408 SUPERFAMILY RING/U-box 15 97 - -
Ahy17g3208 408 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Ahy17g3208 408 SUPERFAMILY ARM repeat 115 223 IPR016024 -
Ahy17g3208 408 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 13 407 - -
Ahy17g3208 408 SUPERFAMILY ARM repeat 233 392 IPR016024 -
Ahy17g3208 408 PANTHER WDSAM1 PROTEIN 13 407 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3208 Ahy-Chr17 134172663 134174147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3208 13 408 U-box Gene Family AT3G49810 60.349 1.32e-166 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3208 - - aip:107608514 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3208 17 134172663 134174147 Ahy17g3208 17 134172663 134174147 ECH
Ahy17g3208 17 134172663 134174147 Ahy8g0920 8 17823216 17825183 hybridization