Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3185 ATGGAGGAATACACTAATAATAGCAATAATAATCAAAGCCCAAGTTCAAGTTCAAGGGCAAGTTTCTTGTACTCTTCCTTTGGTGTTGGTGGTGCTACTTCTTCAAGCGTACCCCATCACCTTCCAATTAACACCTTTCATCATCATCATCATCATCATCATCATCAATCTGAAGCTGCTGCTGGATCCGATCACTGCTTTCAATCCGATCAAGTACCTTCCGTCAAAACCGAACCCAGAAACTCCTCGCAGCAGCTCCACAACACTCATCAGATTTTCAACTATCCTCTCATGAGACCCAATGATCTTCACCATTCGAGCGACCAAGGAGGAACCCAAAACTCCAACGATGATGTTGAAGCCATCAAAGCCAAAATCATCGCTCATCCTCACTACTCTAATCTCTTACAAGCGTACATGGATTGCCAAAAGGTAGGAGCTCCGCCGGAAGTGGTGGCGCGTTTAAGCGCGGCTCGGCAGGAATTCGAGGCACGGCAGCGGTCTATGGTTGGTTCCACCAGGGAAGCTTGCGGCAAGGACCCTGAACTTGACCAATTCATGGAGGCATACTATGATATGCTTGTGAAGTACCGAGAGGAACTTTCAAGGCCTATACAAGAGGCTATGGACTTCATGCGCAGGATTGAGACTCAGCTTAATATGCTTTCCAATGGACCCCTTCGCATCTTCTCTGATGATAAATGTGAAGGAGTGGGTTCATCGGAAGAGGATCAACAAGAAAACAGTGGCGGGGAAGAAGAATCAGAAGTAGCGCCGGAGATTGATCCTCGGGCAGAAGACCGTGAACTGAAGAACCACTTGCTTAGAAAGTACAGCGGCTACTTAAGCAGCCTGAAGCAAGAACTGTCAAAGAAGAAGAAGAAAGGAAAACTCCCTAAAGATGCCAGGCAAAAGCTACTTACCTGGTGGGAGCTACATTACAAATGGCCTTATCCTTCGGAATCAGAGAAGGTAGCATTGGCAGAATCAACAGGACTGGATCAGAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAGAGACACTGGAAACCATCTGAAGACATGCAATTCATGGTCATGGATGGACTCCATGCGCATAATAATCATCAGAACGCATCTCCTCTCTACATGGATTCCCATTATGTTATGCCTGATGGACATTACCGCTTACCACCATAA 1182 0.4594 MEEYTNNSNNNQSPSSSSRASFLYSSFGVGGATSSSVPHHLPINTFHHHHHHHHHQSEAAAGSDHCFQSDQVPSVKTEPRNSSQQLHNTHQIFNYPLMRPNDLHHSSDQGGTQNSNDDVEAIKAKIIAHPHYSNLLQAYMDCQKVGAPPEVVARLSAARQEFEARQRSMVGSTREACGKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIETQLNMLSNGPLRIFSDDKCEGVGSSEEDQQENSGGEEESEVAPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHAHNNHQNASPLYMDSHYVMPDGHYRLPP* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3185 393 Gene3D - 294 356 - -
Ahy17g3185 393 ProSitePatterns 'Homeobox' domain signature. 327 350 IPR017970 GO:0000981|GO:0006355
Ahy17g3185 393 SMART KNOX1_2 120 164 IPR005540 GO:0003677|GO:0005634
Ahy17g3185 393 SMART KNOX2_2 173 224 IPR005541 GO:0003677|GO:0005634
Ahy17g3185 393 Pfam KNOX2 domain 178 222 IPR005541 GO:0003677|GO:0005634
Ahy17g3185 393 MobiDBLite consensus disorder prediction 233 266 - -
Ahy17g3185 393 Pfam ELK domain 269 290 IPR005539 GO:0003677
Ahy17g3185 393 Pfam KNOX1 domain 121 163 IPR005540 GO:0003677|GO:0005634
Ahy17g3185 393 MobiDBLite consensus disorder prediction 40 86 - -
Ahy17g3185 393 SUPERFAMILY Homeodomain-like 290 364 IPR009057 -
Ahy17g3185 393 ProSiteProfiles 'Homeobox' domain profile. 289 352 IPR001356 GO:0003677
Ahy17g3185 393 SMART HOX_1 291 356 IPR001356 GO:0003677
Ahy17g3185 393 CDD homeodomain 301 353 IPR001356 GO:0003677
Ahy17g3185 393 Pfam Homeobox KN domain 309 348 IPR008422 GO:0003677|GO:0006355
Ahy17g3185 393 ProSiteProfiles ELK domain profile. 269 289 IPR005539 GO:0003677
Ahy17g3185 393 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 384 - -
Ahy17g3185 393 MobiDBLite consensus disorder prediction 62 86 - -
Ahy17g3185 393 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 384 - -
Ahy17g3185 393 SMART ELK_2 269 290 IPR005539 GO:0003677
Ahy17g3185 393 SMART ELK_2 182 202 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3185 Ahy-Chr17 133734951 133739788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3185 54 393 Homeobox Transcription Factor Family AT4G08150 66.097 1.78e-141 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ahy17g3185 KNOX2 1.00E-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3185 - - gmx:100807602 488.804