Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3183 ATGCTCCAAAACCTTCGAATCCCTCACTCCGATGGAGAAGGAGGAGGAGGAGGAGTACCACTCTCTCCATTCTCTATCGATGCCGAAGATCCTGACAGTCAACACCACCTCCACGTGTTCTCCACCGATCATTTCCGAATGTTCGACTTCAAGGTTCTGAACTGTCCACGTGGCAGGTCGCACGACTGGACGGAGTGCCCCTACGCTCACCCCGCCGAGAAGGCTCGCCGGAGAGACCCTCGAAAGTACCATTACTCCGGCACTGCGTGCCCGGAGTTTAGAAAGGGGCATTGCCGAAAAGGTGACTCGTGCGAGTTCGCTCACGGCGTGTTCGAGTGCTGGCTCCACCCTCAAAGATACAGGACACAGCTCTGCAAGGACGGCGCGGCCTGCCGCCGCCGCGTCTGCTTCTTTGCACACGCGCCGGATCAGCTGCGCGTGCTGGCTCCCAACTCGGCCGAGTCGCAACTCAGCGACTCGCGGAGTCTTCGTCGCAATAAAAACAACAACGTTTCTTCGCCTACTTCAGTTCTTAATTACTCTTGCTATTTCCCGGAGTCGCCGCCATCTTCGCCTGGGGATCCTCGACACGGCGTCGTTCCGTTTAGTACGGTGCGGGAGTTGGTGAGCTCAATGCGGAACATGCAGCTTGAGGAAATGGGCTGTGTGTATGGGTCTCCGCAATTGGGCCTGGGCCCAATAAGCGGGTGTGAGGAAGAGCCTGCAATGGAGAGAGTGGAATCTGGGAGAGACATTAGGGCGAGAATGTACGCGAAGCTGAGTCGGGAGAACTCTTCGATTGGGAGAAGCGAGGGTCCTTTCCCTGATATTGGATGGGTCTCTGAACTCCTAAAATGA 858 0.5664 MLQNLRIPHSDGEGGGGGVPLSPFSIDAEDPDSQHHLHVFSTDHFRMFDFKVLNCPRGRSHDWTECPYAHPAEKARRRDPRKYHYSGTACPEFRKGHCRKGDSCEFAHGVFECWLHPQRYRTQLCKDGAACRRRVCFFAHAPDQLRVLAPNSAESQLSDSRSLRRNKNNNVSSPTSVLNYSCYFPESPPSSPGDPRHGVVPFSTVRELVSSMRNMQLEEMGCVYGSPQLGLGPISGCEEEPAMERVESGRDIRARMYAKLSRENSSIGRSEGPFPDIGWVSELLK* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3183 285 ProSiteProfiles Zinc finger C3H1-type profile. 85 111 IPR000571 GO:0046872
Ahy17g3183 285 MobiDBLite consensus disorder prediction 1 20 - -
Ahy17g3183 285 Gene3D - 85 148 - -
Ahy17g3183 285 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 109 IPR000571 GO:0046872
Ahy17g3183 285 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Ahy17g3183 285 SMART c3hfinal6 119 142 IPR000571 GO:0046872
Ahy17g3183 285 MobiDBLite consensus disorder prediction 152 172 - -
Ahy17g3183 285 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 30 223 - -
Ahy17g3183 285 PANTHER UNKEMPT FAMILY MEMBER 30 223 IPR045234 -
Ahy17g3183 285 PANTHER UNKEMPT FAMILY MEMBER 236 284 IPR045234 -
Ahy17g3183 285 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 236 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3183 Ahy-Chr17 133672549 133673981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3183 24 152 C2H2 Transcription Factor Family AT5G12850 62.016 2.61e-55 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy17g3183 zf-CCCH 1.10E-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3183 - K23048 adu:107461217 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3183 17 133672549 133673981 Ahy17g3183 17 133672549 133673981 ECH
Ahy17g3183 17 133672549 133673981 Ahy8g0891 8 17224001 17225412 hybridization