Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3155 ATGGCGGGAAGAATGAGAGTGAAGGAGGAAGAGGAGACTGTGGTTTTGTGTGGGAGCGGACCAGGTGGTTCATCTTCTTCATCAAGCGTGTCACCGCAACCCATGGAAGGGTTGCACGATGTGGGACCACCACCGTTTCTGACGAAGACCTTCGAAGTGGTGGAGGATCCTTCCACCGACTCCATTGTTTCTTGGAGCAGAGCTCGCAACAGCTTCGTTGTGTGGGACTCGCACAGATTCTCCACCACAATCTTGCCTCGTTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTACGGGTTTAGGAAAGTGGATCCTGATCGATGGGAATTTGCGAACGAGGGTTTCTTGGCAGGGCAGAAGCATTTGTTGAGGACGATAAAGAGGAGGAGGAATGTGACGCAGTCGTCAACGAACATGATCCAGCACGGAGAAGGAGGAGGAGGAGGAAGTTGTGTTGAGTTAGGTGAGTTTGGTTTGGAAGGTGAAATAGAGAGGCTGAGAAGGGATAGGACGGTGTTAATGGCGGAGATCGTGAAGCTGAGGCAGCAACAGCACAACTCGAGGGAGCGGATTTGTTCAATGGAGTCAAGGTTGCAAGTCACAGAGAAGAAACAAACTCAGATGATGACTTTCCTGGCCAAAGCACTCCACAACCAATCTTTCATTCATAACCTTTCTCTTCAGAACAGAGAATTACAGGGTTTTGAGATGAGCAGGAAGAGGAGAATAACTGCTACCGCAAGTGTGGAGAATCTGCAATTGGATCCTGTTGCTGTTGGAGAAGAGCAAGAGGAATTGGAGACACTTTTGTCAAGTGCTTGCGATAATGAATCAAGCAGTGAAATGAAGGAGACTACTACTACTGCTGCTGCTGCTACCAGTGAGAATATATGGGAAGATTTGCTTAGTGAGGATTTAGTTGGTGGGAATCCGGAGGATGAAGTTGTGATTGGTGATTACCCGCACCAAAATCTTGAAGATTTGGCTGCAACAAACACTGGCGACGTGAGAAGAAGATAA 1038 0.4807 MAGRMRVKEEEETVVLCGSGPGGSSSSSSVSPQPMEGLHDVGPPPFLTKTFEVVEDPSTDSIVSWSRARNSFVVWDSHRFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQKHLLRTIKRRRNVTQSSTNMIQHGEGGGGGSCVELGEFGLEGEIERLRRDRTVLMAEIVKLRQQQHNSRERICSMESRLQVTEKKQTQMMTFLAKALHNQSFIHNLSLQNRELQGFEMSRKRRITATASVENLQLDPVAVGEEQEELETLLSSACDNESSSEMKETTTTAAAATSENIWEDLLSEDLVGGNPEDEVVIGDYPHQNLEDLAATNTGDVRRR* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3155 345 SUPERFAMILY "Winged helix" DNA-binding domain 42 135 IPR036390 -
Ahy17g3155 345 Gene3D - 39 136 IPR036388 -
Ahy17g3155 345 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 311 IPR027725 -
Ahy17g3155 345 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy17g3155 345 PRINTS Heat shock factor (HSF) domain signature 97 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy17g3155 345 PRINTS Heat shock factor (HSF) domain signature 46 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy17g3155 345 MobiDBLite consensus disorder prediction 19 34 - -
Ahy17g3155 345 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 25 311 - -
Ahy17g3155 345 SMART hsfneu3 42 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy17g3155 345 MobiDBLite consensus disorder prediction 1 38 - -
Ahy17g3155 345 ProSitePatterns HSF-type DNA-binding domain signature. 85 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy17g3155 345 Coils Coil 169 189 - -
Ahy17g3155 345 Pfam HSF-type DNA-binding 46 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3155 Ahy-Chr17 133307647 133309742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3155 32 335 HSF AT2G26150 52.830 2.89e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ahy17g3155 HSF_DNA-bind 2.50E-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3155 K09419 - gmx:100794605 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3155 17 133307647 133309742 Ahy17g3155 17 133307647 133309742 ECH
Ahy17g3155 17 133307647 133309742 Ahy8g0867 8 16897140 16899596 hybridization
Ahy16g3303 16 149928856 149931701 Ahy17g3155 17 133307647 133309742 PCT
Ahy6g2601 6 111224868 111227748 Ahy17g3155 17 133307647 133309742 PCT
Ahy17g3155 17 133307647 133309742 Ahy16g3303 16 149928856 149931701 PCT
Ahy17g3155 17 133307647 133309742 Ahy6g2601 6 111224868 111227748 PCT