Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3072 ATGTCACCGCCGGTATTTAACATAGCGGGGGAGGAGGAGGGCAAAAGCAATGTCACTTTGTTGGTTTCGTCGACTGCTATGGAATGTGCTCGCATCGAGAGCTCCGAGTTGAAAGTGCGCAACTACATGGAATTGTCTGGTTGTTCTTCTGCTGACAGCTCGGTTTCGCCCTTACCGGACGAGCATAAAAGTAATCTGAACCTGAAAGCTACCGAACTCAGGCTTGGTCTCCCGGGATCTCAGTCTCCTGAGAGAGATTCTGATCATTGCTTAAGAAGCTCAACTCAGTTTGATGAGAAACCTTTTTTCCCCCTGTGCCCCTTGACCGACGATCATCATCAATCCCCTGCAAAGGCTGCTGTTTTGGGTAACAAAAGAGGATTCTTAGATGTAATGAATGGGTTCCAGAAGGGGAATTTTTTATCTAATTCAGAAGTGAATACAATTCTGTCGCCGAGGCCTTCTTCTAACTTAGGATTGAAACCTGGTTCTATGCTTGAGAGTCTTGGGGTTCAACAAGCCATAAAGAAAGAAGTTTCGACTACAAAGGTTGGGGTCGAGAAGCCTCATGCTTTCAATGAGACCAGACCCAGTCTTAATGGTTCTGCGAATAATAATAGCAGTGCACCAGCTACCAAGGCTCAGGTCGTGGGGTGGCCTCCCCTAAGGTCATTTAGGAAGAATTCACTGGCAACTAATTCGAAAAACACAGAAGAAGTAGATGGACAACCGGGGTCCGGTCCACTGTTTGTCAAGGTCAGCTTGGAGGGTGCTCCCTATTTAAGGAAAGTAGACTTGAAGAATTACTCTACATACCCGGAACTATGTTCTGCTCTAGAGAAGATGTTCCGCGGTTTTACTATAAGTCAATGCGGATCTTATGGGACTCTGGGAAAGGAGTTGCTGAATGAAACCAAGCTGAAGGATCTTCTTCATGGGTCGGAATATGTTCTTACCTATGAAGACAAAGATAATGATTGGATGCTTGTGGGTGATGTTCCATGGGAGATGTTTATCGAAACATGCCGAAGGCTGAGGATCATGAAGAGTTCAGAAGCAATTGGCCTTGCTTGCAGCTCCAAGGGCTGTTGA 1092 0.4606 MSPPVFNIAGEEEGKSNVTLLVSSTAMECARIESSELKVRNYMELSGCSSADSSVSPLPDEHKSNLNLKATELRLGLPGSQSPERDSDHCLRSSTQFDEKPFFPLCPLTDDHHQSPAKAAVLGNKRGFLDVMNGFQKGNFLSNSEVNTILSPRPSSNLGLKPGSMLESLGVQQAIKKEVSTTKVGVEKPHAFNETRPSLNGSANNNSSAPATKAQVVGWPPLRSFRKNSLATNSKNTEEVDGQPGSGPLFVKVSLEGAPYLRKVDLKNYSTYPELCSALEKMFRGFTISQCGSYGTLGKELLNETKLKDLLHGSEYVLTYEDKDNDWMLVGDVPWEMFIETCRRLRIMKSSEAIGLACSSKGC* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3072 363 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 23 360 IPR003311 GO:0005634|GO:0006355
Ahy17g3072 363 Pfam AUX/IAA family 71 357 IPR033389 -
Ahy17g3072 363 SUPERFAMILY CAD & PB1 domains 244 349 - -
Ahy17g3072 363 Gene3D - 245 362 - -
Ahy17g3072 363 MobiDBLite consensus disorder prediction 195 213 - -
Ahy17g3072 363 PANTHER AUXIN-INDUCED PROTEIN 23 360 - -
Ahy17g3072 363 ProSiteProfiles PB1 domain profile. 248 350 IPR000270 GO:0005515
Ahy17g3072 363 MobiDBLite consensus disorder prediction 180 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3072 Ahy-Chr17 132103515 132106940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3072 250 353 B3 DNA Binding Superfamily AT1G19220 33.654 2.47e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ahy17g3072 AUX_IAA 7.30E-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3072 K14484 - gmx:100815447 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3072 17 132103515 132106940 Ahy17g3072 17 132103515 132106940 ECH