Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3070 ATGGAGATCTACTATGACGATCACCATGATTTCTTAGAGGAACTCATGGCTCTAAGAAGAGAAACATTAATGGAAACCAATTATGACAACACCACTTTTCATTCTTCTTTTCCCCCAAACTCTTCTTCTTCTTCTTCTTACCAACAGGATCTTATTCTTCCTCATCAAATTTACGACGACGACAACTTCTTCAACCAAATCTATGATTCCCTGTTGTTTGACGAACAATCCCCGCCGCCATTGATGATGGATCATTATTCTTCTTCCTCGTACTACAGTAATAACACCAGCAGCAACCTTGATTCTTATTATCCTCCATTGTCGTTCATGGAAGAAGAGGAGCTTCAGAATTTGGAGATTGAAACTGCAACAAGGTGTAAAGTGGAACCAGTAGTAACTGTAACTTGCTGTGATTCTGAGTCCCCTGCTGCGATTTTCAACGCAGATTCTGTCATGGGAAATAAGGAAATTAGAAAGAACAGCAGGTCAACAAAGAAGGTTGTGGGTCAACCCTCCAAGAATCTTATGGCGGAAAGGAGAAGAAGAAAGAGACTCAATGATAGACTCTCAATGCTAAGAGCCATTGTCCCCAAGATTAGTAAGATGGATAGAACATCAATACTTGGAGACACCATTGATTACATGAAAGAGCTTCTAGAGAAGATCAACAATTTGCAACAAGAAGCTGTAAAAGTTGAAGATTCAAACATGGCAGGTGGCATTTTCAAAGATGTAATTAAACCAAATGAAATCTTGATTAGAAATTCACCCAAGTTTGCGGTTGAGAGGGGTGTGGATAATACGAGGGTTGAGATTTGCTGTGCGGGGAAGCCAGGAATGTTGCTTTCAACAGTTAACACCTTGGAAGCATTAGGCCTTGACATTCAACAATGTGTTATAAGCTGTTTCAATGATTTCACAATGCACGTTTCTTGCTCAGAGGAACCGGAGCAAAGGGCAATGCTGAATTCTGAAGATATAAAGCAAGCGTTATTTAGAAGTGCTGGTTACGGAGGAAGATGCTTGTGA 1029 0.4033 MEIYYDDHHDFLEELMALRRETLMETNYDNTTFHSSFPPNSSSSSSYQQDLILPHQIYDDDNFFNQIYDSLLFDEQSPPPLMMDHYSSSSYYSNNTSSNLDSYYPPLSFMEEEELQNLEIETATRCKVEPVVTVTCCDSESPAAIFNADSVMGNKEIRKNSRSTKKVVGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQQEAVKVEDSNMAGGIFKDVIKPNEILIRNSPKFAVERGVDNTRVEICCAGKPGMLLSTVNTLEALGLDIQQCVISCFNDFTMHVSCSEEPEQRAMLNSEDIKQALFRSAGYGGRCL* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3070 342 Pfam Helix-loop-helix DNA-binding domain 175 218 IPR011598 GO:0046983
Ahy17g3070 342 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 25 342 - -
Ahy17g3070 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 231 IPR036638 GO:0046983
Ahy17g3070 342 SMART finulus 175 224 IPR011598 GO:0046983
Ahy17g3070 342 Gene3D - 177 247 IPR036638 GO:0046983
Ahy17g3070 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Ahy17g3070 342 PANTHER DNA BINDING PROTEIN 25 342 - -
Ahy17g3070 342 Coils Coil 208 235 - -
Ahy17g3070 342 CDD ACT_UUR-ACR-like 268 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3070 Ahy-Chr17 132049933 132052782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3070 162 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 62.431 3.68e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy17g3070 HLH 1.50E-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3070 - - gmx:100812578 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3070 17 132049933 132052782 Ahy7g1299 7 26506051 26508056 hybridization