Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3065 ATGGGGAGAGGGAAGATCGTGATAAGGAGGATCGATAACTCGACGAGTAGGCAAGTAACGTTCTCGAAGCGGAGAAGCGGTTTGCTGAAGAAGGCGAAGGAGCTTTCGATTCTTTGCGATGCTGAGGTTGGAGTTGCGATCTTCTCCAGCACCGGAAAACTCTATGATTACGCCAGTTCCAGACCGTTTAGATCTAGCAGTTTGAATGGTTGGATTGGAACTTCTAAGCTCATCCCAAGATTGATCTTCATGCAAAATCAGGGCATGAAATCAGTGATTGATCGATACAACAAAACAAAAGAGGAGCATAACCCCCTTGGAAGTTCAACCTCTGAGATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTGCAGAACTTGCAAGAAAGTCACCGGCAAATGATGGGAGAAGAACTGTCAGGTATGACTGTCAAAGATTTACATAGTTTAGAGAACCAACTGGAAGTTAGCCTCCATGGTGTCCGTGCAAAAAAGGAACAACTTTTAATGGAGGAAATACAGGAACTGAATCGAAAGGGGAACCTCATACACCAAGAAAATATGGAACTGTATAAGAAGGTAAACCTAATTCGTCAAGAAAACACGGAACTGAAGAAGAAGGTCTATGGAACAAGAAATGGGAGTGGAACAGACAGAAACTCTGTTATAACAAATGGTATAAGCATAGAGGAAGACTTGCAGGTTCCTGTGAATCTCCAGCTAAGCCAACCACAGCAACAGAACTATGAGGCCACGTCAGGAGCCACAAAGTTGGGCAGATTGTAG 795 0.4377 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVAIFSSTGKLYDYASSRPFRSSSLNGWIGTSKLIPRLIFMQNQGMKSVIDRYNKTKEEHNPLGSSTSEIKFWQREAAMLRQQLQNLQESHRQMMGEELSGMTVKDLHSLENQLEVSLHGVRAKKEQLLMEEIQELNRKGNLIHQENMELYKKVNLIRQENTELKKKVYGTRNGSGTDRNSVITNGISIEEDLQVPVNLQLSQPQQQNYEATSGATKLGRL* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3065 264 Coils Coil 190 210 - -
Ahy17g3065 264 Coils Coil 113 140 - -
Ahy17g3065 264 Pfam K-box region 110 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy17g3065 264 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy17g3065 264 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy17g3065 264 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy17g3065 264 ProSiteProfiles K-box domain profile. 113 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy17g3065 264 PANTHER SERUM RESPONSE FACTOR HOMOLOG 83 262 - -
Ahy17g3065 264 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 60 - -
Ahy17g3065 264 CDD MADS_MEF2_like 2 103 IPR033896 GO:0000977|GO:0045944
Ahy17g3065 264 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 83 262 - -
Ahy17g3065 264 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 60 - -
Ahy17g3065 264 Gene3D - 13 119 IPR036879 GO:0003677|GO:0046983
Ahy17g3065 264 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy17g3065 264 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy17g3065 264 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy17g3065 264 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3065 Ahy-Chr17 131936491 131967216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3065 1 258 MADS-box Gene Family AT2G22630 51.163 1.38e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy17g3065 K-box 7.10E-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3065 K09264 - gmx:100812413 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3065 17 131936491 131967216 Ahy17g3065 17 131936491 131967216 ECH
Ahy17g3065 17 131936491 131967216 Ahy7g1755 7 65288053 65297572 hybridization