Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3062 ATGACAACACTACTCGGGGTGCAACTCACCATTCAAGATCGTCATGTGGTGGTGGAGAATGGCATAGTAAGAGTAACGATTTCAAATCCAGAAGGAATAGTGACTGGAATTCAGTATAATGGAATCGACAACTTGCTTGAAGTTTTGAATGACGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAACTACAGGAACCACTGGCAAATTTGACGTAATAAAAGGAACCGCTTTCAAAGTAATAATGGAAAATGAGGATCAAGTTGAGATTTCTTTCACAAGAACATGGGACGTGTCCCTCAAAGACCAGCTAGTTCCTTTGAATATCGATAAAAGGTTCATAATGCTTCGTGGTACTTCGGGGTTCTATTCATATGCTATTTACGAACACTTAAGCGAGTGGCCTGCTTTTAATCTTGACGAAACCAGAATTGCTTTCAAGCTCAGAAAAGACAAGTTCCATTATATGGCAATGGCGGATAACCGACAAAGAAACATGCCTCTTCCTGATGATCGAGTGCCACCAAGAGGCCAACCCCTTGCATATCCCGAAGCAGTTCTTTTTGGCGATCCTCTTGAACCTGAATTCAAAGGAGAGGTAGATGACAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGGTGGGTGTGCATGGATCCTGCCGTTGGATTTTGGCTAATTACGCCCAGCAATGAGTTCCGTTCTGGTGGGCCCCTCAAACAAAACTTAACCTCCCACGTTGGACCCACCACGCTCGCTGTGTTTCTAAGTGCCCATTATAGTGGAGAGGACTTGGTGCCAAAATTCAAAGAAGGAGAAGCATGGAAGAAGGTTTTTGGTCCAGTTTTCATTTATTTGAATTCTCCTAATGACGATAATGGTGATGTTGAACCCCATAAAATGCTCTGGGAAGATGCTAAACTTCAGATGAATGTAGAAGTACAAAGTTGGCCTTACACTTTTCCCGAATCAGATGATTACCCAAAGTGGTACGAACGGGGTATTGTTACTGGCAGGTTATTAGTTAGAGAGAGGTATATAAGCGATGATGACTACATAGCAGCAAAAGGTGCATATGTTGGTTTGGCTCCCCCTGGAGATGTTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTCTGGAGTGAAGCAGATGAAGATGGGTATTTCTCCATCAGCAATGTACGAGCTGGTGACTATAATTTATATGCATGGGTACCTGGTTTTATTGGAGACTACAAATACAATAATTCAATTATAACCATAGCGGAAGGGTCTACTACTTTGATTGAATTGGGTGATCTTGCTTATGAGCCACCAAGAGATGGACCAACACTTTGGGAAATAGGGATTCCAGATCGTGTAGCTGCAGAGTTCTATGTTCCTGATCCAAATCCCAAATACATCAACAAACTCTACGTTAATCATCCTCAAAAATTTAGGCAATATGGATTATGGGAGAGATATGCAGAATTGTACCCCGACAAAGATTTAATCTACACTGTTGGAGTTAGTGATTACACCAAAGATTGGTTCTTTGCCCAAGTTACAAGGAAGAAAGACGACAATACATATCAAGGAACCACTTGGCAGATCAAGTTTCAGCTTTCCAATGTAAACAAAACCGGTACCTATAAACTGCGCCTGGCTTTGGCTTCCGCTACATTTTCTGAACTCCAGGTGCGAGTTAATGATCCAAAGGCAAGTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCAATTGCAAGGCATGGAATTCATGGACTCTATTGGCTTTTCAATGTGGACATTCAAGGAACCAAACTTGTTGAAGGAGATAACACCATTTTTCTAACACAAGCTAGAGGCAATACCCCATTTCAGAACATTATGTATGATTACGTTCGTTTGGAAGGTCCACCACAACCACCTAGTTTAAATAAAAACATTTAA 1962 0.4144 MTTLLGVQLTIQDRHVVVENGIVRVTISNPEGIVTGIQYNGIDNLLEVLNDESNRGYWDLVWSSPTTTGTTGKFDVIKGTAFKVIMENEDQVEISFTRTWDVSLKDQLVPLNIDKRFIMLRGTSGFYSYAIYEHLSEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRVPPRGQPLAYPEAVLFGDPLEPEFKGEVDDKYQYSCDNKDSQVHGWVCMDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKEGEAWKKVFGPVFIYLNSPNDDNGDVEPHKMLWEDAKLQMNVEVQSWPYTFPESDDYPKWYERGIVTGRLLVRERYISDDDYIAAKGAYVGLAPPGDVGSWQRECKNYQFWSEADEDGYFSISNVRAGDYNLYAWVPGFIGDYKYNNSIITIAEGSTTLIELGDLAYEPPRDGPTLWEIGIPDRVAAEFYVPDPNPKYINKLYVNHPQKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFQLSNVNKTGTYKLRLALASATFSELQVRVNDPKASRPLFSSGLIGRDNSIARHGIHGLYWLFNVDIQGTKLVEGDNTIFLTQARGNTPFQNIMYDYVRLEGPPQPPSLNKNI* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3062 653 Pfam Rhamnogalacturonate lyase family 7 204 IPR010325 -
Ahy17g3062 653 Gene3D - 450 641 - -
Ahy17g3062 653 SUPERFAMILY Galactose mutarotase-like 9 297 IPR011013 GO:0003824|GO:0005975|GO:0030246
Ahy17g3062 653 SUPERFAMILY Starch-binding domain-like 383 437 IPR013784 GO:0030246
Ahy17g3062 653 CDD RGL4_M 339 442 IPR029413 -
Ahy17g3062 653 CDD RGL4_N 9 295 - -
Ahy17g3062 653 SUPERFAMILY Galactose-binding domain-like 449 641 IPR008979 -
Ahy17g3062 653 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 5 645 - -
Ahy17g3062 653 CDD RGL4_C 454 641 - -
Ahy17g3062 653 Pfam Polysaccharide lyase family 4, domain III 452 640 IPR029411 -
Ahy17g3062 653 Gene3D - 7 306 IPR014718 GO:0030246
Ahy17g3062 653 Pfam Polysaccharide lyase family 4, domain II 363 435 IPR029413 -
Ahy17g3062 653 Gene3D - 339 439 - -
Ahy17g3062 653 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 5 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3062 Ahy-Chr17 131888683 131898137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3062 7 643 Polysaccharide Lyase AT1G09890 70.625 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3062 K18195 - gmx:100793563 1150.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3062 17 131888683 131898137 Ahy8g0765 8 15187272 15195817 hybridization