Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3061 ATGAACAACTACTTCTTCCTCTTCCTCTTCCTCTCTTCTTTTACCTATTCATCAGGGGTGCGCTTGGACATTCACGATAAACATGTGGTTATGGATAATGGCATAGTTGAGGTCACAATATCAAATCCTGAAGGATTTGTTACAGAGATTCGGTATAATGGAATCGACAATTTGCTTGAACTTCTTAACAAGGAATCTAACCGAGGGTACTTTGATATGGTGTGGGATGAAGGTAAGTCAAAGAGGAAAAAAGGTGAATTTGACAGAATGGAAGCTACAAATATGAGTGTGATAGTGGAAAATGAGGAACAAGTGGAGCTATCATTCACCAGAATGTGGAATTCTTCCCTTCAGGGATTGTATCCCCCACTCAACATTGATAAAAGGTTCCATTACATGGTGGTAGCAGGGGACAGACAGAGATTTATGCCTCTTCCTGATGATAGAGAAGAAGGAAGAGGCCAAGTTCTTGCTTATCCTGAAGCTGTCTTGCTTCTCAATCCTATTGAGCCTCAATTCAAAGGAGAGGTGGATGACAAGTATCAATATTCATGTGAGAGTAGAAAGAACCAAGTTCATGGTTGGATATCCATGGATCCACCCAAGTCCACCGGCTTCTGGATCATCACCCCAAGCAATGAGTTCCGATCCGGCGGCCCGCTCAAACAATATCTCGCTTCTCACGTCGGCCCCACTTCTCTATCCGTATTCCATAGCACACACTATTCCGGGGTAGATCTGATAATGAGGTTTAGGCCCAATGAAGCCTGGAAGAAAGTATATGGGCCCATATTTATATATCTTAATTCACTCTCTAATGGAGAAAGCCCAACCGGGCTCTGGGACGACGCCAGACAACAGATGGTGAATGAAATTGAAAGCTGGCCCTATAAGTTTCCAGCTTCGGAGGAGTATGTGAAAGCTGAGCAAAGGGGTCAAGTTGAAGGAAGATTGCTTGTCCGAGACAGGTACATGAGTGATGCATTCATCCCAGTTAGCAGTGCTTCTGTGGGATTAGCTTCTCCAGGAGAGCCTGGCTCTTGGCAAAGGGAATCCAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTACTAACATACTCCCTGGGGAATATAATCTCTACTCCTGGGTCAAAGGATACATTGGTGACTATAAATATGATAAAGTCATTAACATAACTTCAGGGAGTGAAGTTAATGTGGGTGAAATTGTTTATGAGGCACCAAGAGAAGGTGCTACTTTGTGGGAAATAGGTATACCTGATCGTTCTGCTGCTGAGTTCTATGTTCCTGATCCTAACCCCAAATACATTAACAGAATTTATGTCAACCATACAGATAGGTATAGGCAATATGGTTTGTGGGAGAGATATGCTGATTTGTATCCAAAAGAAGACTTAGTATACAATGTTGGCACAAGTGACTATACAAAAGATTGGTTCTTTGCTCAGGTTAACAGGAAGAAGGAGAATAAGACATACCAAGCAACCACTTGGCAAATTAATTTCAATTTGGAAAATGTGAATGCCAATGGAACTTACAAATTGCGAGTGGCTCTGGCCTCTGTACATTATGCCGAGTTACAGATTCGGGTGAAGAATTCATCAGAAGCAAATCCACCATTATTTACAAGTGGAGTTATTGGATCAGAAAACACCATAGCTAGACATGGAATTCATGGGTTCTATTGGCTTTTCAACGTTGATATAAAAGGCACTCTTCTTGCACAGGGAAATAATTCAATCTTTTTTTCACAACCCAATAATACAAGTCCATTTCAAGGAATTTTGTATGATTATATTCGTCTAGAAGCACCACCCCATCACACAAATTTCACACCAAAATTAAATATTCTTCCAAATTAA 1881 0.4099 MNNYFFLFLFLSSFTYSSGVRLDIHDKHVVMDNGIVEVTISNPEGFVTEIRYNGIDNLLELLNKESNRGYFDMVWDEGKSKRKKGEFDRMEATNMSVIVENEEQVELSFTRMWNSSLQGLYPPLNIDKRFHYMVVAGDRQRFMPLPDDREEGRGQVLAYPEAVLLLNPIEPQFKGEVDDKYQYSCESRKNQVHGWISMDPPKSTGFWIITPSNEFRSGGPLKQYLASHVGPTSLSVFHSTHYSGVDLIMRFRPNEAWKKVYGPIFIYLNSLSNGESPTGLWDDARQQMVNEIESWPYKFPASEEYVKAEQRGQVEGRLLVRDRYMSDAFIPVSSASVGLASPGEPGSWQRESKGYQFWTITDDKGYFSITNILPGEYNLYSWVKGYIGDYKYDKVINITSGSEVNVGEIVYEAPREGATLWEIGIPDRSAAEFYVPDPNPKYINRIYVNHTDRYRQYGLWERYADLYPKEDLVYNVGTSDYTKDWFFAQVNRKKENKTYQATTWQINFNLENVNANGTYKLRVALASVHYAELQIRVKNSSEANPPLFTSGVIGSENTIARHGIHGFYWLFNVDIKGTLLAQGNNSIFFSQPNNTSPFQGILYDYIRLEAPPHHTNFTPKLNILPN* 627
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3061 626 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 6 130 - -
Ahy17g3061 626 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 129 610 - -
Ahy17g3061 626 SUPERFAMILY Galactose-binding domain-like 417 609 IPR008979 -
Ahy17g3061 626 Pfam Polysaccharide lyase family 4, domain II 334 405 IPR029413 -
Ahy17g3061 626 Pfam Rhamnogalacturonate lyase family 24 130 IPR010325 -
Ahy17g3061 626 Pfam Polysaccharide lyase family 4, domain III 419 608 IPR029411 -
Ahy17g3061 626 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 6 130 - -
Ahy17g3061 626 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 129 610 - -
Ahy17g3061 626 Gene3D - 166 282 IPR014718 GO:0030246
Ahy17g3061 626 CDD RGL4_M 310 409 IPR029413 -
Ahy17g3061 626 CDD RGL4_N 25 270 - -
Ahy17g3061 626 Gene3D - 306 407 - -
Ahy17g3061 626 CDD RGL4_C 421 609 - -
Ahy17g3061 626 Gene3D - 416 609 - -
Ahy17g3061 626 SUPERFAMILY Starch-binding domain-like 306 407 IPR013784 GO:0030246
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ahy17g3061 Ahy-Chr17 131844186 131869609 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3061 18 611 Polysaccharide Lyase AT1G09890 61.076 0.0 794
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3061 K18195 - gmx:100786488 957.977
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3061 17 131844186 131869609 Ahy7g1754 7 65197892 65227595 hybridization