Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3030 ATGACGAGGACGAAGATAAAGATAAAGAAGATCGATAACGTAGCGGCAAGGCAGGTAACGTTTTCGAAGAGGAGGAGAGGGCTGTTGAAGAAGGCTCATGAGCTTTCTGTGCTTTGTGATGCTGAGCTTGCTCTCATTGTTTTCTCAGCTACCGGCAAGCTCTTTCATTATGCCAGTTCCAGTTTGGACGACACAATTAAAAGGTATAATAATGGGCACTTTCATGACATCAACAAATTGGAAAGACTTCCGAACCTGCAGATTGAGGATAATAGTAGCGCCAAGTTATGTGAGGAAGTTGCAAAACGAACTCAAGAACTAAGGAGGATGGATGGTGAGGATCTTGAAGGATTAGACTTGAGGGGCTTGCAGAACTTGGAGAAAACACTTGAAACAGGACTCGATCGTGTCATTCGCATGAAGGAGAAGCGGATTATGGGCGAGATTTTGCAACTTCAGAATAAGGGGATTACGTTGGAAGAGGAGAACAAGCAGTTAAAGCAAAAGGTGGCTGTTCTGCGAAAAGGGAAAAATAATCCTCCATTTCTATTGGATTTGGATGATACTATTGATGGGAATGATAATAATAATATTAATAATAATAACGATGAGGAAGGTACCTCATTCATAGAATCTATGAATAACATTAGCAGTTGCAGCAGTAACCTTCCTCCAGAGGATGATTCGTCAGACACTTCTCTCAAGTTAGGGTTGCCCTTCTCTAACTAA 729 0.4156 MTRTKIKIKKIDNVAARQVTFSKRRRGLLKKAHELSVLCDAELALIVFSATGKLFHYASSSLDDTIKRYNNGHFHDINKLERLPNLQIEDNSSAKLCEEVAKRTQELRRMDGEDLEGLDLRGLQNLEKTLETGLDRVIRMKEKRIMGEILQLQNKGITLEEENKQLKQKVAVLRKGKNNPPFLLDLDDTIDGNDNNNINNNNDEEGTSFIESMNNISSCSSNLPPEDDSSDTSLKLGLPFSN* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3030 242 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Ahy17g3030 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy17g3030 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy17g3030 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy17g3030 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy17g3030 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 236 - -
Ahy17g3030 242 Pfam K-box region 92 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy17g3030 242 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Ahy17g3030 242 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy17g3030 242 MobiDBLite consensus disorder prediction 214 242 - -
Ahy17g3030 242 Coils Coil 123 143 - -
Ahy17g3030 242 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 236 - -
Ahy17g3030 242 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Ahy17g3030 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy17g3030 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy17g3030 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy17g3030 242 Coils Coil 149 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3030 Ahy-Chr17 131238370 131245981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3030 1 240 MADS-box Gene Family AT2G22540 47.131 3.33e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy17g3030 K-box 5.80E-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3030 - - gmx:100776749 237.654