Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3010 ATGGAATTTGACGAGCACGAAGACCAAGAGGAAGAGGAAATGGGGATCCCGGAGCCGCCGCCTGCGCCGCAGGGTTATGACTCGTTTGGAAACTCGGCGGCGAGGTCCAAATCAGAAGGAGGAGGAGGAGGAGGAGCTGCCGCCGTGACACCTGGTCGGAAAGGTGGAACCGGCGTCAGGTACAGAGAATGTCAGAAGAATCACGCGGTCAGTATCGGTGGCCACGCCGTTGACGGTTGCTGCGAGTTTCTAGCCGCCGGAGAGGAAGGAACACTGGAGGCCGTGATCTGCGCTGCCTGCAACTGCCACCGCAATTTCCACCGCAAAGAGATCGACGGCGAGACAAGCCCCTACCACCAGAACACTCCTCGGCCTCAGCAACCGCCGCAACCGCCTCTGCACCACCACCAGTACCACCAACACCATCAATTCTCCCCTTACTACCACCGCGCACCGCCTCCTCCTACCGGCGGATACCTCCACCTGTCAACTCCGCCGGTGTCGCAGCACCGGCCTCTAGCTCTTCCAGCAGCCGCATCAGGCGGCGGTGGATTCTACAAAGAGGAAGAAGACATGTCAAACCCTAGCAGCAGCGGCGGCGGCGGCGGCGGTAGCGGAAGCGGAACAAAGAAGAGGTTTAGAACGAAATTCACACAGGAGCAGAAGGATAAGATGCTTGCATTCGCGGAGCAGTTAGGGTGGAGAATCCAGAAGCATGATGAATCTGCAGTTGAGAATTTCTGCGCTGAAACCGGTGTTAAGAGACATGTTCTCAAGGTTTGGATGCATAACAATAAGCACACTCTCGTCAGGTACTTGCATTGTGTTATGAAGACGAGGTACCTCGTCCACCATTATTATTAA 864 0.5637 MEFDEHEDQEEEEMGIPEPPPAPQGYDSFGNSAARSKSEGGGGGGAAAVTPGRKGGTGVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGETSPYHQNTPRPQQPPQPPLHHHQYHQHHQFSPYYHRAPPPPTGGYLHLSTPPVSQHRPLALPAAASGGGGFYKEEEDMSNPSSSGGGGGGSGSGTKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHDESAVENFCAETGVKRHVLKVWMHNNKHTLVRYLHCVMKTRYLVHHYY* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3010 287 Pfam ZF-HD protein dimerisation region 59 111 IPR006456 -
Ahy17g3010 287 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 210 266 IPR006455 -
Ahy17g3010 287 MobiDBLite consensus disorder prediction 113 211 - -
Ahy17g3010 287 MobiDBLite consensus disorder prediction 1 15 - -
Ahy17g3010 287 MobiDBLite consensus disorder prediction 1 58 - -
Ahy17g3010 287 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Ahy17g3010 287 SUPERFAMILY Homeodomain-like 196 269 IPR009057 -
Ahy17g3010 287 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 196 269 - -
Ahy17g3010 287 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 32 196 - -
Ahy17g3010 287 Gene3D - 195 270 - -
Ahy17g3010 287 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 110 IPR006456 -
Ahy17g3010 287 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 196 269 - -
Ahy17g3010 287 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 32 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3010 Ahy-Chr17 130672550 130674517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3010 7 272 ZF-HD Transcription Factor Family AT4G24660 51.685 7.17e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ahy17g3010 ZF-HD_dimer 3.90E-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3010 - - gmx:100820567 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3010 17 130672550 130674517 Ahy17g3010 17 130672550 130674517 ECH
Ahy17g3010 17 130672550 130674517 Ahy7g1713 7 62728224 62732264 hybridization
Ahy17g3010 17 130672550 130674517 Ahy8g0709 8 13887469 13889843 hybridization
Ahy17g3010 17 130672550 130674517 Ahy17g3010 17 130672550 130674517 PCT
Ahy17g3010 17 130672550 130674517 Ahy8g0709 8 13887469 13889843 PCT
Ahy7g1713 7 62728224 62732264 Ahy17g3010 17 130672550 130674517 PCT
Ahy17g3010 17 130672550 130674517 Ahy7g1713 7 62728224 62732264 PCT
Ahy8g0709 8 13887469 13889843 Ahy17g3010 17 130672550 130674517 PCT