Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g3004 ATGTCTTCCAATTCGTACCGAGGAGGTTCCGCCTACGGTGATGCCGCCCCTTTCCGATCCAGAGAGGGACTTAGCACGAGACCAGCTGCTTCCTCCGATGAAATCCAATTGCGCATTGATCCCATGGACATGGACTTGGACCACGAAATCACCGGTCTTCGCGGCCAAGTCAAAAAGTTGAGAAATGTTGCTCAAGAGATAGGTACAGAAGTAAAGCAGCAGAAGGATTTTTTGGAAGAGCTGCAAACATTGATGACGAACGCTCAAGCCGGTGTTAAGAATAATATAAGAAGATTGAACAAGAGCATTGTTCGAAGTGGTTCAAACCATGTTGTTCATGTGGTTTGTTTTGCATTAATTTGTTTCTTTGTAGTATACGCTTGGTCAAAGATGTTTAGAAAATGA 405 0.4395 MSSNSYRGGSAYGDAAPFRSREGLSTRPAASSDEIQLRIDPMDMDLDHEITGLRGQVKKLRNVAQEIGTEVKQQKDFLEELQTLMTNAQAGVKNNIRRLNKSIVRSGSNHVVHVVCFALICFFVVYAWSKMFRK* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g3004 134 Gene3D - 47 109 - -
Ahy17g3004 134 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 9 133 - -
Ahy17g3004 134 CDD SNARE_Qc 45 101 - -
Ahy17g3004 134 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 40 102 IPR000727 -
Ahy17g3004 134 PANTHER GOLGI SNARE BET1-RELATED 9 133 IPR039897 GO:0015031|GO:0030173
Ahy17g3004 134 SMART tSNARE_6 35 102 IPR000727 -
Ahy17g3004 134 MobiDBLite consensus disorder prediction 1 33 - -
Ahy17g3004 134 SUPERFAMILY SNARE fusion complex 34 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g3004 Ahy-Chr17 130583291 130585398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g3004 34 131 SNARE and Associated Proteins AT3G45280 28.000 4.31e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g3004 K08505 - cpap:110816711 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3004 17 130583291 130585398 Ahy17g3004 17 130583291 130585398 ECH
Ahy17g3004 17 130583291 130585398 Ahy7g1710 7 62095818 62098607 hybridization
Ahy17g3004 17 130583291 130585398 Ahy17g1771 17 45158810 45162788 PCT
Ahy17g3004 17 130583291 130585398 Ahy8g0703 8 13803343 13805477 PCT
Ahy17g1771 17 45158810 45162788 Ahy17g3004 17 130583291 130585398 PCT
Ahy8g0703 8 13803343 13805477 Ahy17g3004 17 130583291 130585398 PCT