LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy17g2992	ATGAATCGAGAGCTAATGAAAGAGGTTTCTGATCAGGAAATCAAAGAAGCTACTTTCAGCCTTGGAAGTCTTAAGGCACCGGGTCCAGATGAATTAAATGGCCTTTTTTTCCAAAAGCATTGGGCAATTATTGAAAAGGAGGTTTGTGAAGTTGTTAAGCATTTCTTTCAGGAAGGGGTCCTACCAAGTAGGATCGGAGATACTATTATAGTTTTGGTTCCTAAGACCAATTACCCAGAAACTCTTAATCAGCTTCGACCGATTAGCTGTTGTAACTTTATATATAAGATCATTTCTAAGGTGTTGGTTATTAGGCTTAGAAGAATAATAGATGCGATTGTTTCACCTATCCAGAGTGCTTTTGTGGGGAGACGCCTCATTCAGGATAACATGGTAATAGTGCAGGAAATGTTTCATGCTTTAAATAAAAAAGGGCAGCATGCTTCCAGGAATTTAGCCGTTAAGATTGATATGAATAAAGCCTATGACAGGGTTGAATGGTCGTTCCTAGAAGCAACTCTGAAAGCTTTTGGGTTTAATCTGCACTGGGTTAAGTTGATTATGATGTGTGTCTCGCAGGTTTCTTATAAAATTAAGATCAATGGTGTTTTGTCTAGAAGTTTTGTGCCGCAGAGGGGACTAAGGCAGGGAGACCCCATTTTGCCATACCTGTTTATCATAGCAGCTGAAGTTTTTACTATTCTTGTGGACAAGGCTAAAGACGAGGGTAGAATCTCTGGTGTCAGAATTGCTCCCACTGCTCTAGCCATTTCTCATATTCTCTTTGCGGATGATTGCATTATCTTCTCGAAGGATAGTGAGGAGGAAGTTTATCAGCTCATTACTATTTTAAATATGTATACAGAAGCCTCGGGGCAGCAAATAAATGTTGACAAGTCTGGGATTACGTTCCACAATCAGGTTCCGATCAGAAATAGAGTAGAAATAGAAGAGATCTTAGGGTTGCCTGCTTGGGATCAACCAGGTAAGTACCTTGGTCTTCCGACTCAGTGGGGCAGATCTAAGAATAAAGCTCTGAGGTGGATTGAGGAGCGAGTGTCTGATAAGCTTTGCGGTTGGAAAGAAAAACTTCTTTCTCAGTCTGGGAGGGAGGTTCTCATCAAATCGGTTATTCAAGTGATACCTGCCTATGCTATGAATGTCGTCCTCTTTTTAAAGGTTTTTGTCACCGCCTTTGTCAGAAAGTGGCTAAATTTTGGTGGGCCTCTACTGGTAAGGATAGGGGTATCCATTGGAGGAGTTGGGATAAAATTTGTGCTAGCAAAAGGGATGGTGGAATTGGCTGTCTATTTTCCAAATGTGGATTTTAAAGTAACTAAGGCAGGAAACGAAGCATCTTGGATATGGAAAAGTATTGTGCATGGTAAGGATTTCCTTTTGAAAAATGGGAGATGGTTGATTGGGAATGGAGAAAAAGTGAGAATCTTAGATGATAATTGGATATTGAACATGAAAAAGAGTCCTGATGTTATGATTGATGACGTCACGTTTGTAAAGGAGCTAATTAGTGAAGGACAGGGGTGGAATATAAGTGAGTTAAGGAAACATTTTGATGGAGATACTGTTGGAAAGATCATTAGAACCCCGGTGAGTGTTATTGGCAGAGAAGACAAACTTAGTTGGCCTCTTAAACCAGATGGAAAGTACACTATCAAAATGGGATATCATGCTGCCAGGAAAGAGCAGCATCTTGATAATAACAATAGCCCATCAACTAGTGATGACTTCAAGGACTTATGGAGAGACATTTGGAAATTAAGAGAACCAGAGTCCACTGAGCATGCGCTGCTGCTCTGCCCTTGGACAAGGGCTGCGTGGTTTGGAGCCCAAATTCAGTGCTGTCCTACGGCCCATACAGTCTCATCTTTTGGAAAATGGGTAATAGATCTTTTTAAAAATATGAAGGTGGGCACAGGAACTGATTATGAACTGTGTAGCAGCAGAGTAGGTTTTTTTGGCATGGGAGAATTTGCAGATTTCCCAGAAGAACCAGCTATAAGTTCTATTCATGATAGGAGGACAGTTAAAAGGGTTACCTGGAGACCGCCTCCACCAGGATGGATCAAGTGCAATGTTGATGCAGCGTTTCTCGAAGTGTTCTCTGGAGGAGCAACAGCGGCAGTATTCAGAGACCATGCTGGAAACCTCCTCACAACCTCAAACTCTAAAATTGCGGCTTCCTCACCTTTAGCTGCGGAAGCATTAGCGGTTGAAAGTTTGGAGGCATTTTGGATGTGGATTTTGGTACCTTCCTTGTCGGGAGAGGGTGGAATGCCATTTTGGGTCTTCGGGGTTTCCTTGAGTCGGGTTGGGTTGCTCATGTCCACTAGAGAGTTTCAGTCCATCCCAGATTGTGCTTGTTCTGAGGTAGTGGGTCTGCATTCACCTCTGATGTGGGTCAGCTGCGGTTTCAGCATCGCCATCCTTTGGAGGGTGGTGGCGGAGCCACCTCATGCACCAATGATGGATTTTGTGAAGAACTCTCGCGGTTATGTGATGGAACTCAACAAGCACCTTGCTAGTGATGAAAGAATTGAAATTTGTCAAATTCCTGTTGGTGATGGCATTACCTTGTGCCGCCGTGTCATCTGA	2613	0.4275	MNRELMKEVSDQEIKEATFSLGSLKAPGPDELNGLFFQKHWAIIEKEVCEVVKHFFQEGVLPSRIGDTIIVLVPKTNYPETLNQLRPISCCNFIYKIISKVLVIRLRRIIDAIVSPIQSAFVGRRLIQDNMVIVQEMFHALNKKGQHASRNLAVKIDMNKAYDRVEWSFLEATLKAFGFNLHWVKLIMMCVSQVSYKIKINGVLSRSFVPQRGLRQGDPILPYLFIIAAEVFTILVDKAKDEGRISGVRIAPTALAISHILFADDCIIFSKDSEEEVYQLITILNMYTEASGQQINVDKSGITFHNQVPIRNRVEIEEILGLPAWDQPGKYLGLPTQWGRSKNKALRWIEERVSDKLCGWKEKLLSQSGREVLIKSVIQVIPAYAMNVVLFLKVFVTAFVRKWLNFGGPLLVRIGVSIGGVGIKFVLAKGMVELAVYFPNVDFKVTKAGNEASWIWKSIVHGKDFLLKNGRWLIGNGEKVRILDDNWILNMKKSPDVMIDDVTFVKELISEGQGWNISELRKHFDGDTVGKIIRTPVSVIGREDKLSWPLKPDGKYTIKMGYHAARKEQHLDNNNSPSTSDDFKDLWRDIWKLREPESTEHALLLCPWTRAAWFGAQIQCCPTAHTVSSFGKWVIDLFKNMKVGTGTDYELCSSRVGFFGMGEFADFPEEPAISSIHDRRTVKRVTWRPPPPGWIKCNVDAAFLEVFSGGATAAVFRDHAGNLLTTSNSKIAASSPLAAEALAVESLEAFWMWILVPSLSGEGGMPFWVFGVSLSRVGLLMSTREFQSIPDCACSEVVGLHSPLMWVSCGFSIAILWRVVAEPPHAPMMDFVKNSRGYVMELNKHLASDERIEICQIPVGDGITLCRRVI*	871

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy17g2992	870	Gene3D	Vaccinia Virus protein VP39	813	869	IPR029063	-
	Ahy17g2992	870	PANTHER	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	132	596	-	-
	Ahy17g2992	870	SUPERFAMILY	DNA/RNA polymerases	23	320	IPR043502	-
	Ahy17g2992	870	CDD	RT_nLTR_like	67	335	-	-
	Ahy17g2992	870	Pfam	Reverse transcriptase (RNA-dependent DNA polymerase)	73	334	IPR000477	-
	Ahy17g2992	870	PANTHER	-	132	596	-	-
	Ahy17g2992	870	Pfam	O-methyltransferase	816	869	IPR002935	GO:0008171
	Ahy17g2992	870	ProSiteProfiles	Reverse transcriptase (RT) catalytic domain profile.	54	336	IPR000477	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy17g2992	Ahy-Chr17	130411696	130415340	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy17g2992	816	869	Monolignol Biosynthesis Gene Families	AT4G34050	60.000	1.88e-14	73.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy17g2992	-		-	ahf:112763956	1739.16

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