Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2992 ATGAATCGAGAGCTAATGAAAGAGGTTTCTGATCAGGAAATCAAAGAAGCTACTTTCAGCCTTGGAAGTCTTAAGGCACCGGGTCCAGATGAATTAAATGGCCTTTTTTTCCAAAAGCATTGGGCAATTATTGAAAAGGAGGTTTGTGAAGTTGTTAAGCATTTCTTTCAGGAAGGGGTCCTACCAAGTAGGATCGGAGATACTATTATAGTTTTGGTTCCTAAGACCAATTACCCAGAAACTCTTAATCAGCTTCGACCGATTAGCTGTTGTAACTTTATATATAAGATCATTTCTAAGGTGTTGGTTATTAGGCTTAGAAGAATAATAGATGCGATTGTTTCACCTATCCAGAGTGCTTTTGTGGGGAGACGCCTCATTCAGGATAACATGGTAATAGTGCAGGAAATGTTTCATGCTTTAAATAAAAAAGGGCAGCATGCTTCCAGGAATTTAGCCGTTAAGATTGATATGAATAAAGCCTATGACAGGGTTGAATGGTCGTTCCTAGAAGCAACTCTGAAAGCTTTTGGGTTTAATCTGCACTGGGTTAAGTTGATTATGATGTGTGTCTCGCAGGTTTCTTATAAAATTAAGATCAATGGTGTTTTGTCTAGAAGTTTTGTGCCGCAGAGGGGACTAAGGCAGGGAGACCCCATTTTGCCATACCTGTTTATCATAGCAGCTGAAGTTTTTACTATTCTTGTGGACAAGGCTAAAGACGAGGGTAGAATCTCTGGTGTCAGAATTGCTCCCACTGCTCTAGCCATTTCTCATATTCTCTTTGCGGATGATTGCATTATCTTCTCGAAGGATAGTGAGGAGGAAGTTTATCAGCTCATTACTATTTTAAATATGTATACAGAAGCCTCGGGGCAGCAAATAAATGTTGACAAGTCTGGGATTACGTTCCACAATCAGGTTCCGATCAGAAATAGAGTAGAAATAGAAGAGATCTTAGGGTTGCCTGCTTGGGATCAACCAGGTAAGTACCTTGGTCTTCCGACTCAGTGGGGCAGATCTAAGAATAAAGCTCTGAGGTGGATTGAGGAGCGAGTGTCTGATAAGCTTTGCGGTTGGAAAGAAAAACTTCTTTCTCAGTCTGGGAGGGAGGTTCTCATCAAATCGGTTATTCAAGTGATACCTGCCTATGCTATGAATGTCGTCCTCTTTTTAAAGGTTTTTGTCACCGCCTTTGTCAGAAAGTGGCTAAATTTTGGTGGGCCTCTACTGGTAAGGATAGGGGTATCCATTGGAGGAGTTGGGATAAAATTTGTGCTAGCAAAAGGGATGGTGGAATTGGCTGTCTATTTTCCAAATGTGGATTTTAAAGTAACTAAGGCAGGAAACGAAGCATCTTGGATATGGAAAAGTATTGTGCATGGTAAGGATTTCCTTTTGAAAAATGGGAGATGGTTGATTGGGAATGGAGAAAAAGTGAGAATCTTAGATGATAATTGGATATTGAACATGAAAAAGAGTCCTGATGTTATGATTGATGACGTCACGTTTGTAAAGGAGCTAATTAGTGAAGGACAGGGGTGGAATATAAGTGAGTTAAGGAAACATTTTGATGGAGATACTGTTGGAAAGATCATTAGAACCCCGGTGAGTGTTATTGGCAGAGAAGACAAACTTAGTTGGCCTCTTAAACCAGATGGAAAGTACACTATCAAAATGGGATATCATGCTGCCAGGAAAGAGCAGCATCTTGATAATAACAATAGCCCATCAACTAGTGATGACTTCAAGGACTTATGGAGAGACATTTGGAAATTAAGAGAACCAGAGTCCACTGAGCATGCGCTGCTGCTCTGCCCTTGGACAAGGGCTGCGTGGTTTGGAGCCCAAATTCAGTGCTGTCCTACGGCCCATACAGTCTCATCTTTTGGAAAATGGGTAATAGATCTTTTTAAAAATATGAAGGTGGGCACAGGAACTGATTATGAACTGTGTAGCAGCAGAGTAGGTTTTTTTGGCATGGGAGAATTTGCAGATTTCCCAGAAGAACCAGCTATAAGTTCTATTCATGATAGGAGGACAGTTAAAAGGGTTACCTGGAGACCGCCTCCACCAGGATGGATCAAGTGCAATGTTGATGCAGCGTTTCTCGAAGTGTTCTCTGGAGGAGCAACAGCGGCAGTATTCAGAGACCATGCTGGAAACCTCCTCACAACCTCAAACTCTAAAATTGCGGCTTCCTCACCTTTAGCTGCGGAAGCATTAGCGGTTGAAAGTTTGGAGGCATTTTGGATGTGGATTTTGGTACCTTCCTTGTCGGGAGAGGGTGGAATGCCATTTTGGGTCTTCGGGGTTTCCTTGAGTCGGGTTGGGTTGCTCATGTCCACTAGAGAGTTTCAGTCCATCCCAGATTGTGCTTGTTCTGAGGTAGTGGGTCTGCATTCACCTCTGATGTGGGTCAGCTGCGGTTTCAGCATCGCCATCCTTTGGAGGGTGGTGGCGGAGCCACCTCATGCACCAATGATGGATTTTGTGAAGAACTCTCGCGGTTATGTGATGGAACTCAACAAGCACCTTGCTAGTGATGAAAGAATTGAAATTTGTCAAATTCCTGTTGGTGATGGCATTACCTTGTGCCGCCGTGTCATCTGA 2613 0.4275 MNRELMKEVSDQEIKEATFSLGSLKAPGPDELNGLFFQKHWAIIEKEVCEVVKHFFQEGVLPSRIGDTIIVLVPKTNYPETLNQLRPISCCNFIYKIISKVLVIRLRRIIDAIVSPIQSAFVGRRLIQDNMVIVQEMFHALNKKGQHASRNLAVKIDMNKAYDRVEWSFLEATLKAFGFNLHWVKLIMMCVSQVSYKIKINGVLSRSFVPQRGLRQGDPILPYLFIIAAEVFTILVDKAKDEGRISGVRIAPTALAISHILFADDCIIFSKDSEEEVYQLITILNMYTEASGQQINVDKSGITFHNQVPIRNRVEIEEILGLPAWDQPGKYLGLPTQWGRSKNKALRWIEERVSDKLCGWKEKLLSQSGREVLIKSVIQVIPAYAMNVVLFLKVFVTAFVRKWLNFGGPLLVRIGVSIGGVGIKFVLAKGMVELAVYFPNVDFKVTKAGNEASWIWKSIVHGKDFLLKNGRWLIGNGEKVRILDDNWILNMKKSPDVMIDDVTFVKELISEGQGWNISELRKHFDGDTVGKIIRTPVSVIGREDKLSWPLKPDGKYTIKMGYHAARKEQHLDNNNSPSTSDDFKDLWRDIWKLREPESTEHALLLCPWTRAAWFGAQIQCCPTAHTVSSFGKWVIDLFKNMKVGTGTDYELCSSRVGFFGMGEFADFPEEPAISSIHDRRTVKRVTWRPPPPGWIKCNVDAAFLEVFSGGATAAVFRDHAGNLLTTSNSKIAASSPLAAEALAVESLEAFWMWILVPSLSGEGGMPFWVFGVSLSRVGLLMSTREFQSIPDCACSEVVGLHSPLMWVSCGFSIAILWRVVAEPPHAPMMDFVKNSRGYVMELNKHLASDERIEICQIPVGDGITLCRRVI* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2992 870 Gene3D Vaccinia Virus protein VP39 813 869 IPR029063 -
Ahy17g2992 870 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 132 596 - -
Ahy17g2992 870 SUPERFAMILY DNA/RNA polymerases 23 320 IPR043502 -
Ahy17g2992 870 CDD RT_nLTR_like 67 335 - -
Ahy17g2992 870 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 73 334 IPR000477 -
Ahy17g2992 870 PANTHER - 132 596 - -
Ahy17g2992 870 Pfam O-methyltransferase 816 869 IPR002935 GO:0008171
Ahy17g2992 870 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 54 336 IPR000477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2992 Ahy-Chr17 130411696 130415340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2992 816 869 Monolignol Biosynthesis Gene Families AT4G34050 60.000 1.88e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2992 - - ahf:112763956 1739.16