Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2988 ATGGCACTAGAGGCTGTGGTTTTTCCACAAGATCCATTATTCTCATATGCTTCTTCTACCACCACCACCAAGGATTATTTCTACTCATCCTTTCTCGGCAGCCACCACCACGATCTCATCGGAATTATAAACAACAACATCATTCAACAAAACCAAGCAACTAACAATTCCGACTCTTCTTCTCCTCCTTCCAACAACGACCACTGGGATCATTCTCACTACGCCACTTCTTCCAGCTCCCCTGACTGCTGCGCTGCCACTGTTGATCAACCTTCTGTCCCCACCACCACTGGCCGCCGCAAACGCCGCCGCACCAAAACCACCAAGAACAAGGAGGACATCGAGAACCAGAGGATGACTCACATTGCTGTTGAACGCAACCGCCGCAAACAGATGAACGACTACCTCGCCGTCCTTCGTTCTTTGATGCCTCCTTCTTATGTTCAAAGAGGTGACCAAGCGTCTATTATTGGAGGCGCCATTAACTTTGTGAAGGAGCTAGAGCAGCTTTTGCAGTCCATGGAGGGTCAAAAGAAACCCAACCACCACGACACTACTGCTGCTGGTGGCGCCGCCGGAATGAATAGTAGTGGCCAATCATCGCCGTTTGGCGAATTCTTCGCGTTTCCGCAGTACACAACGCGTGGTCATCATCAGGGAAACAACAACGCAACGACGATGGCAGCGGAGCAGCAACAGAAACAGTGGGCGCCGGCGGTGGCGGACATAGAAGTGACAATGGTGGACAGCCATGCGAACCTCAAGATTCTATCAAAGAAACGACATGGGCAGCTGATGAAGATGGTTGTTGGTCTCCAATCTCTAAGCCTCACCATTCTCCACCTTAATGTTACCACTCTCCATGACTTCGTCCTTTACTCTGTTAGCGTAAAGGCAGAGGATGGGTGCCAGCTGAATACGGTGGATGAAATAGCTGCTGCTGTGAATCAACTATTATGCGCAGTTCAACAAGAGGCATCATCTTTCAACGAAATTAATTAG 1002 0.496 MALEAVVFPQDPLFSYASSTTTTKDYFYSSFLGSHHHDLIGIINNNIIQQNQATNNSDSSSPPSNNDHWDHSHYATSSSSPDCCAATVDQPSVPTTTGRRKRRRTKTTKNKEDIENQRMTHIAVERNRRKQMNDYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKKPNHHDTTAAGGAAGMNSSGQSSPFGEFFAFPQYTTRGHHQGNNNATTMAAEQQQKQWAPAVADIEVTMVDSHANLKILSKKRHGQLMKMVVGLQSLSLTILHLNVTTLHDFVLYSVSVKAEDGCQLNTVDEIAAAVNQLLCAVQQEASSFNEIN* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2988 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983
Ahy17g2988 333 CDD bHLH_AtFAMA_like 119 187 - -
Ahy17g2988 333 MobiDBLite consensus disorder prediction 52 95 - -
Ahy17g2988 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 183 IPR036638 GO:0046983
Ahy17g2988 333 MobiDBLite consensus disorder prediction 175 198 - -
Ahy17g2988 333 MobiDBLite consensus disorder prediction 52 113 - -
Ahy17g2988 333 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983
Ahy17g2988 333 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 327 - -
Ahy17g2988 333 PANTHER MAX DIMERIZATION, MAD 1 327 - -
Ahy17g2988 333 SMART finulus 122 173 IPR011598 GO:0046983
Ahy17g2988 333 Gene3D - 104 183 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2988 Ahy-Chr17 130289279 130291644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2988 1 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 52.104 2.62e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy17g2988 HLH 3.60E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2988 - - gmx:100789380 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2988 17 130289279 130291644 Ahy17g2988 17 130289279 130291644 ECH
Ahy17g2988 17 130289279 130291644 Ahy7g1694 7 61425795 61428855 hybridization
Ahy17g2988 17 130289279 130291644 Ahy17g1795 17 46404301 46409211 PCT
Ahy17g2988 17 130289279 130291644 Ahy8g0692 8 13568709 13570579 PCT
Ahy17g1795 17 46404301 46409211 Ahy17g2988 17 130289279 130291644 PCT
Ahy8g0692 8 13568709 13570579 Ahy17g2988 17 130289279 130291644 PCT