Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2958 ATGGGAAGGTCTCCATGCTGCGATGAGAGTGGCCTTAAGAAAGGTCCATGGACTCCTGAAGAGGATCAAAAGCTTGTTCACCACATTCAGAAACATGGCCATGGAAGTTGGAGAGCACTTCCTAAGTTAGCGGGTCTTAATAGATGTGGCAAGAGTTGTAGACTTAGGTGGACTAACTATTTGAGGCCTGATATTAAGAGGGGCAAATTCTCCCAAGAAGAGGAGCAAACCATTCTCCATCTTCATTCCATTCTTGGAAACAAGTGGTCAGCAATTGCGACCCATCTTCCGGGGAGAACAGACAACGAGATAAAGAATTTCTGGAACACTCATTTGAAGAAGAAGCTGATTCAGATGGGTTTTGATCCAATGACTCATCAACCAAGAACTGACCTTGTTTCTACCCTCCCATACCTCATAGCTTTGGCAAGCATGATGGATACATCATCATCATCAATTGATGAACATGCTCTGAGCTTACAAGCAGAGGCAATTCAAATGGCAAAGCTTCAGTACCTTCATTACTTACTCCAATCTTCTTCATCAAATTCCAACCTTGCCTTCGACCATAACAATCCCATCAACATCACAAACATGGAACCTCCTTTCAGTTTGTTAAATGTGAAAGAGAATATTAATACTAATAATAATAATAATAATAATGGTCCTTCTTCATTTCCTCCTCATCATCATCATCATGGGAATGGGATTCTTATTGATGATGATAGTAGCTGTCAACCACTCCACTACCACCCAAACATGCTATTATCTCACTTTTTAGACCCACCATCACAACAAGTCTCTTTCAATTCCCAATCATGTTTGAATAATATTAATGAGCAAGGTCAAGGTTCTACTACTAACTATGCAATCATAAGTCAAATGGATCACACAACAGCTGATGATAATTCCTCCTGGATTGTTCCATCTTCTACTTCTCCATTATCATCTATTGCTCCAAATAATAATGGACCCTCTACTACTACTAGTAACAATAATAACAATAATAATAATCCAGGAGATACAAGCAGCACCACTTCTAGCTATGGAGGACCTGCTTCTTCCTCCTCTTCTTATTGGTCTGAACTCTTTCTTGTGGACCCTACTATCATGCATGAGCTACCTTAG 1128 0.3998 MGRSPCCDESGLKKGPWTPEEDQKLVHHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSTLPYLIALASMMDTSSSSIDEHALSLQAEAIQMAKLQYLHYLLQSSSSNSNLAFDHNNPINITNMEPPFSLLNVKENINTNNNNNNNGPSSFPPHHHHHGNGILIDDDSSCQPLHYHPNMLLSHFLDPPSQQVSFNSQSCLNNINEQGQGSTTNYAIISQMDHTTADDNSSWIVPSSTSPLSSIAPNNNGPSTTTSNNNNNNNNPGDTSSTTSSYGGPASSSSSYWSELFLVDPTIMHELP* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2958 375 MobiDBLite consensus disorder prediction 300 352 - -
Ahy17g2958 375 CDD SANT 69 112 IPR001005 -
Ahy17g2958 375 SMART sant 13 63 IPR001005 -
Ahy17g2958 375 SMART sant 66 114 IPR001005 -
Ahy17g2958 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ahy17g2958 375 CDD SANT 16 61 IPR001005 -
Ahy17g2958 375 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 363 - -
Ahy17g2958 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 363 - -
Ahy17g2958 375 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ahy17g2958 375 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ahy17g2958 375 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ahy17g2958 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ahy17g2958 375 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ahy17g2958 375 MobiDBLite consensus disorder prediction 213 240 - -
Ahy17g2958 375 Gene3D - 11 67 - -
Ahy17g2958 375 Gene3D - 69 116 - -
Ahy17g2958 375 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2958 Ahy-Chr17 129710795 129712847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2958 1 371 MYB Transcription Factor Family AT1G34670 51.646 1.21e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy17g2958 Myb_DNA-binding 2.10E-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2958 K09422 - gmx:100782792 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2958 17 129710795 129712847 Ahy17g2958 17 129710795 129712847 ECH
Ahy17g2958 17 129710795 129712847 Ahy8g0660 8 13025335 13027053 hybridization