Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2917 ATGGGGCGTGTGAAATTGGAGATAAAAAGAATAGAGAATACCACAAATCGACAAGTTACATTCTCAAAACGTAGAAATGGTCTCATCAAGAAAGCATATGAGTTATCCATCCTTTGTGACATTGATATTGCACTTATCATGTTCTCTCCCTCTGGTCGTCTCAACCATTTCTCTGGCAAAAGGAGGATTGAGGATGTTTTCACACGTTACATTAATCTTCCTGATCAAGAAAGAGATAATGCTGTAAATTTTCCTGAGCCACACTATGGCAGGGGAATTCAGAACAAAGAGTATTTGCTCCGGACCCTTCAACAATTGAGGAATGAGAATGACATAGCTCTTCAACTAGCCAATCCGGGAGTCATTAACTCTGAGATTGAAGAACTCCAACAAGAAGTTAGTAGGCTACATCAACAACTTCAACTGGCTGAAGACCAGATAAGGGCTTATGAACCCGATCCATTAAAGATGACATCTATGGAGGAGCTGGAATCTGGTGAAAAGAATCTTGTGGAGACTTTGACTCGCGTCATGCAAAGAAAGGAATATCTATTGAGCAGCCATTTGCCTACTTATGATCCATCAACTATTCAGGGGATGGCATCAACTTTTGAGAATGTCGGATGGTTGCAAAATGGTACCCAAAACCACAACCAAATATTTGATGCATCTACTCCTTTGGATCCACTCAGGGATTTGCAATCGTCAATTTATGATCCATTTCCACAAGGAACAAATTCACAAAGCGATACAAGAAACATTGGAGAGTGTCACGTGACAAATCAGAATGACACGTGGCCTCAAGGATACACGTTATACTCTCATATGCAGCATGAGATGGTGGGACCTGACGTGTCGAATATGATGACGACACATGGACAAATGAATCTTCCAATCACAGCCTCTAATTTGCAACCATCCAACAATGAAGCCGGAGAATATGACTGTAAACCTCAAAATCAACTTAACACACAATAA 978 0.407 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLNHFSGKRRIEDVFTRYINLPDQERDNAVNFPEPHYGRGIQNKEYLLRTLQQLRNENDIALQLANPGVINSEIEELQQEVSRLHQQLQLAEDQIRAYEPDPLKMTSMEELESGEKNLVETLTRVMQRKEYLLSSHLPTYDPSTIQGMASTFENVGWLQNGTQNHNQIFDASTPLDPLRDLQSSIYDPFPQGTNSQSDTRNIGECHVTNQNDTWPQGYTLYSHMQHEMVGPDVSNMMTTHGQMNLPITASNLQPSNNEAGEYDCKPQNQLNTQ* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2917 325 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy17g2917 325 Coils Coil 126 146 - -
Ahy17g2917 325 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 276 - -
Ahy17g2917 325 Pfam K-box region 125 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy17g2917 325 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy17g2917 325 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy17g2917 325 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy17g2917 325 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy17g2917 325 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy17g2917 325 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Ahy17g2917 325 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 276 - -
Ahy17g2917 325 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Ahy17g2917 325 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy17g2917 325 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Ahy17g2917 325 MobiDBLite consensus disorder prediction 298 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2917 Ahy-Chr17 128879041 128883623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2917 1 317 Type I MADS-box Gene Family AT1G22130 57.100 3.33e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy17g2917 K-box 2.60E-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2917 - - adu:107460753 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2917 17 128879041 128883623 Ahy17g2917 17 128879041 128883623 ECH