Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2895 ATGCCTCGCCGTAGTGCTCCGTCCTCATCATTGCCGCCGAGGCCAACACCAATTCCCGCCAAATTCTGGCGCGCATGTGCTGGAATCTCTGCGCAGGCACCAGTAGTGAACTCTAGGGTTTACTACTTTCCACAGGGACACATCGATCAAGCTGCTTCGCAACCGCGAAACCTTTCACCTCGGGTTTACTCCAGGCCGGTCATCCCTTGCCGTGTCGCCGCCGTCAACTACTTCGCGGACCCTAACACCGACGAGGTCTTCCTCAAGATTCTTCTTCTTCCTGTTACCGATGGATCCGCTCAAGATTTTCTTCCACCTGCCGTCGCCGCCGAAGGCAACAGCGGCAACGGCAATGGCGACGATGAAGAGGTTGCGTCTTACGCCAAGATTCTCACGCGGTCCGATGCGAATAATGGTGGAGGGTTTTCGGTGCCGAGATCCTGTGCGGACTTGGTCTTCCCGCCGTTGAACTTTGAAGAGGACCCGCCGGTGCAGAACCTTAGAATAACCGACCTCCACGGCGCCGTATGGGAGTTTCGCCACATCCACCGCGGGACTCCGAGACGGCACCTCTTCACATCTGGCTGGAGCAAGTTCGTTAACAGCAAGAAGATTATCTCCGGAGATACTGTGGTTTTCATGAAGGACTCCCATGGGAGGATGTTCGTGGGGCTCCGCCGCAATATGTCGCTGGACGATGATATCTCAGATGGAGGATTGGATTGGTGTGAAGCTATCGTCGGGATGGACGAAGGCAAAGAAGAAAAAGAAGAGAAAGAAGAAGAAGAAGAGGTGATGACGGAGGGATTTGCAAGAAACGGGAAGGGGAGAGTGTCTTCGACATCTGTGGCGGAGGCAATGGAGCTGGCGGCGCAAAACAAGCCGTTCGAAGTTGTTTACTATCCAAGCGTAGGTTGGGGGGAGTTTGTGGTGAAGGCGGAGGACGTGGACGCGATGATTAATGGTATTCCCTGGAGTGTTGGGATGAGAGTGAAAATGGGCAGAGAGAACTATGATTCGTCACGGATGGATTGGTTTCAGGGAACTGTTTCTGGTGTTACTGTTCCCGGTAAAGATCAACCATGGAGCGGTTCTCCTTGGCGCATGCTTCAGATTACATGGGATGAATCCGAGATCTTGAAGAATGTAAATTCTGTCAGTCCATGGCAGGTGGAACTTCTTTCTGAGACATTTTTACTTCCTCAAATGTTTCCCCCAACAAAGAGGTTCAGAACTACAGATGGTTCTGGAGTATTCACTAATGAAATGGGAGAATCCTCCTCTTCCATTTCAAGATTTTCTATTCCTGATTCAACAATGGGACTGCTGAATCAAACATTGTTGAGTAATTATGATACTCTTTTTTCCCCTAGCATGCAGGGAGCCAGGCATCCTCTATTTTCTGCAGTTACTCATCCCCTCTTTTCGATTGATCCTTCTCTGTCTATTGATAGTTCCTTTGAGAATAATATTGTACCAAAGTTAAATGTTATGTTGCCAAAACTTAACATTGACACTCATAAGCCTAAAAACTTATCACCACAAAGCAAGTTTAGTTCGACTCCCATTGATGAGACCCCTAACAGCAACTCAACCAAATCTGGAGCTTCTTCATTTCAGTTATTTGGTTGTACTATTCAAACAGATAAAGTTTCTGATAAAATTGATGACCATAACAATGTTGAAGGAGAAGACAACATACAATAA 1707 0.4815 MPRRSAPSSSLPPRPTPIPAKFWRACAGISAQAPVVNSRVYYFPQGHIDQAASQPRNLSPRVYSRPVIPCRVAAVNYFADPNTDEVFLKILLLPVTDGSAQDFLPPAVAAEGNSGNGNGDDEEVASYAKILTRSDANNGGGFSVPRSCADLVFPPLNFEEDPPVQNLRITDLHGAVWEFRHIHRGTPRRHLFTSGWSKFVNSKKIISGDTVVFMKDSHGRMFVGLRRNMSLDDDISDGGLDWCEAIVGMDEGKEEKEEKEEEEEVMTEGFARNGKGRVSSTSVAEAMELAAQNKPFEVVYYPSVGWGEFVVKAEDVDAMINGIPWSVGMRVKMGRENYDSSRMDWFQGTVSGVTVPGKDQPWSGSPWRMLQITWDESEILKNVNSVSPWQVELLSETFLLPQMFPPTKRFRTTDGSGVFTNEMGESSSSISRFSIPDSTMGLLNQTLLSNYDTLFSPSMQGARHPLFSAVTHPLFSIDPSLSIDSSFENNIVPKLNVMLPKLNIDTHKPKNLSPQSKFSSTPIDETPNSNSTKSGASSFQLFGCTIQTDKVSDKIDDHNNVEGEDNIQ* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2895 568 Pfam Auxin response factor 286 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy17g2895 568 SMART B3_2 127 229 IPR003340 GO:0003677
Ahy17g2895 568 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Ahy17g2895 568 SUPERFAMILY DNA-binding pseudobarrel domain 123 233 IPR015300 -
Ahy17g2895 568 CDD B3_DNA 126 227 IPR003340 GO:0003677
Ahy17g2895 568 MobiDBLite consensus disorder prediction 508 537 - -
Ahy17g2895 568 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Ahy17g2895 568 PANTHER AUXIN RESPONSE FACTOR 15 557 - -
Ahy17g2895 568 MobiDBLite consensus disorder prediction 505 537 - -
Ahy17g2895 568 Gene3D - 325 398 - -
Ahy17g2895 568 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 557 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy17g2895 568 Gene3D - 124 229 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2895 Ahy-Chr17 128478381 128480445 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2895 22 553 B3 DNA Binding Superfamily AT1G77850 42.727 9.34e-132 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy17g2895 B3 1.70E-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2895 - - aip:107607845 1046.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2895 17 128478381 128480445 Ahy17g2895 17 128478381 128480445 ECH