Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2894 ATGCCTCGCCGTAGTGCTCCGTCCTCATCATTGCCGCCGAGGCCAACACCAATTCCCGCCAAATTCTGGCGCGCATGTGCTGGAATCTCTGCACAGGCACCAGTAGTGAACTCTAGGGTTTACTACTTCCCACAGGGACACATCGATCAAGCTGCTTCGCAACCGCGAAACCTTTCACCTCTCGTTTACTCCAGGCCGGTCATCCCTTGCCGTGTCTCCGCCGTCAACTACTTCGCGGACCCTAACACCGACGAGGTCTTCCTCAAGATTCTTCTTCTTCCTGTTACCGATGGATCCGCTCAAGATTTTCTTCCGCCTGCCGTCGCCGCCGAAGGCAACAGCGGCAACGGCAATGGCGACGATGAAGAGGTTGCGTCTTACGCCAAGATTCTCACGCGGTCCGATGCGAATAATGGTGGAGGGTTTTCAGTGCCGAGATCCTGTGCGGACTTGGTCTTCCCGCCGTTGAACTTTGAAGAGGACCCGCCGGTGCAGAACCTTAGAATAACCGACCTCCACGGCGCCGTATGGGAGTTTCGCCACATCCACCGCGGGACTCCGAGACGGCACCTCTTCACATCTGGCTGGAGCAAGTTCGTTAACAGCAAGAAGATTATCTCCGGCGATACCGTGGTTTTCATGAAGGACTCCGATGGGAGGATGTTCGTGGGGCTCCGCCGCAATATGTCGCTGGACGATGATATCTCAGATGGAGGATTGGATTGGTGTGAAGCTATCGTCGGGATGGACGCAGGCAAAGAAGAAAAAGAAGAGAAAGAAGAAGAAGAGGTGATGACGGAGGGATTTGCAAGAAACGGGAAGGGGAGAGTGACTTCGACATCTGTGGCGGAGGCGATGGAGCTGGCGGCGCAAAACAAGCCGTTCGAAGTTGTTTACTATCCAAGCGTAGGTTGGGGGGAGTTTGTGGTGAAGGCGGAGGACATGGACGCGATGATTAATGGTATTCCCTGGAGTGTTGGGATGAGAGTGAAAATGGGCAGAGAGAACTATGATTCGTCACGGATGGATTGGTTTCAGGGAACTGTTTCTGGTGTTACTGTTCCCGGTAAAGATCAACCATGGAGTGGTTCTCCTTGGCGCATGCTTCAGATTACATGGGATGAATCCGAGATTTTGAAGAATGTAAATCCTGTCAGTCCATGGCAGGTGGAACTTCTTTCTGAGACACTTTTACTTCCTCAAATATTTCTCCCAACAAAGAGGTTCAGAACTACAGATGGTTCTGGAGTATTCATTAATGAAATGGGAGAATCCTCCTCTTCCATTTCAAGATTTTCTATTCCTGATTCAACAATGGGATTGCTGAATCAAACATTGTTGAGTAATTATGATACTCTTTTTTCTGCTAGCATGCAGGGAGCCAGGCATCCTCTATTTTCTGCAGCTACTTATCCCCTCTTTCCGATTGATCCTTCTCTGTCTATTGATAGTTCCTTTGAGAATAACATTGTACCAAAGTTAAATGTTATGTTGCCAAAACTTAACATTGACACTCATAAACCTAAAAACTTATCACCACATAGCAAGTCTAGTTTGACTCCCATTGATGAGACCCCTAACACCAACTCAACCAAATCTGGAGCTACTTCATTTCAGTTATTTGGTTGTACTATTCAAACAGATCAAGCTTCTGATAAAATTGATGACCATAACAATGTTGAAGGAGAAGACAACATACAATAA 1704 0.4812 MPRRSAPSSSLPPRPTPIPAKFWRACAGISAQAPVVNSRVYYFPQGHIDQAASQPRNLSPLVYSRPVIPCRVSAVNYFADPNTDEVFLKILLLPVTDGSAQDFLPPAVAAEGNSGNGNGDDEEVASYAKILTRSDANNGGGFSVPRSCADLVFPPLNFEEDPPVQNLRITDLHGAVWEFRHIHRGTPRRHLFTSGWSKFVNSKKIISGDTVVFMKDSDGRMFVGLRRNMSLDDDISDGGLDWCEAIVGMDAGKEEKEEKEEEEVMTEGFARNGKGRVTSTSVAEAMELAAQNKPFEVVYYPSVGWGEFVVKAEDMDAMINGIPWSVGMRVKMGRENYDSSRMDWFQGTVSGVTVPGKDQPWSGSPWRMLQITWDESEILKNVNPVSPWQVELLSETLLLPQIFLPTKRFRTTDGSGVFINEMGESSSSISRFSIPDSTMGLLNQTLLSNYDTLFSASMQGARHPLFSAATYPLFPIDPSLSIDSSFENNIVPKLNVMLPKLNIDTHKPKNLSPHSKSSLTPIDETPNTNSTKSGATSFQLFGCTIQTDQASDKIDDHNNVEGEDNIQ* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2894 567 Gene3D - 124 229 IPR015300 -
Ahy17g2894 567 PANTHER AUXIN RESPONSE FACTOR 15 561 - -
Ahy17g2894 567 MobiDBLite consensus disorder prediction 512 534 - -
Ahy17g2894 567 MobiDBLite consensus disorder prediction 505 534 - -
Ahy17g2894 567 SUPERFAMILY DNA-binding pseudobarrel domain 123 233 IPR015300 -
Ahy17g2894 567 Gene3D - 324 397 - -
Ahy17g2894 567 CDD B3_DNA 126 227 IPR003340 GO:0003677
Ahy17g2894 567 Pfam Auxin response factor 285 370 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy17g2894 567 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Ahy17g2894 567 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 561 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy17g2894 567 SMART B3_2 127 229 IPR003340 GO:0003677
Ahy17g2894 567 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2894 Ahy-Chr17 128447665 128449776 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2894 22 552 B3 DNA Binding Superfamily AT1G77850 42.752 5.45e-132 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy17g2894 B3 8.00E-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2894 - - aip:107607845 1097.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2894 17 128447665 128449776 Ahy8g0609 8 11881702 11883727 hybridization
Ahy17g2894 17 128447665 128449776 Ahy17g2894 17 128447665 128449776 PCT
Ahy17g2894 17 128447665 128449776 Ahy8g0609 8 11881702 11883727 PCT
Ahy8g0609 8 11881702 11883727 Ahy17g2894 17 128447665 128449776 PCT