Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2892 ATGCCTCGCCGTAGTGCTCCGTCCTCATCATTGCCGCCGAGGCCAACACCAATTCCCGCCAAATTCTGGCGCGCATGTGCTGGAATCTCTGCACAGGCACCAGTAGTGAACTCTAGGGTTTACTACTTTCCACAGGGACACATCGACCAAGCTGCTTCGCAACCGCAAAACCTTTCACCTCTGGTTTACTCCAGGCCGGTCATCCCTTGCCGTGTCGCCGCCGTCAACTACTTCGCGGATCCTAACACCGACGAGGTCTTCCTCAAGATTCTTCTTCTTCCTGTCACCAATGGATCCGCTCAAGATTTTCTTCCACCTGCCGTCGCCGCCGAAGGCAACAGCGGCAACGGCAATGGCGACGATGAAGAGGTTATCTCGTACGCCAAGATTCTCACGCGGTCCGATGCGAATAATGGCGGAGGGTTTTCGGTGCCGAGATCCTGTGCGGACTTGGTCTTTCCGCCGTTGAACTTTGAAGAGGACCCGCCGGTGCAGAACCTTAGAATAACCGATCTCCATGGCGCCGTATGGGAGTTTCGCCACATCTACCGCGGGACTCCGAGACGGCACCTCTTCACATCTGGCTGGAGCAAGTTCGTTAACAGCAAGAAGATTATCTCCGGCGATACTGTGGTTTTCATGAAGGACTCCCATGGGAGGATGTTCGTCGGGCTCCGCCGTAATATGTCGCTGGAGGACGGTATCTCAGATGGTGGATTGGATTGGGTTGCAGCTATGGTCGGGATGGACGAGGGCGAAAAAGAAAAAGAAGAGGAAGAAGAAGAGGCGATGACACAGGGATTTGCAAGAAACGAGAAGGGGAGAGTGACTTCGACATCGGTCGCGGAGGCGATGGAGCTGGCGGCGCAAAACAAGCCGTTCGAAGTTGTTTACTATCCAAGCGTGGGTTGGGGGGAGTTTGTGGTGAAAGCAGAGAAGGTGGACGCGATGATTAATGGTATTCCCTGGAGTGTTGGGATGAGAGTGAAAATGGGCAGAGAGAACTATGATTCGTCACGGATGGATTGGTTTCAGGGAACTGTTTCTGCTGTTAATGTTCCCGGTAAAGATCAACCATGGAGCGGTTCTCCTTGGCGCACGCTTCAGATTACATGGGATGAATCCGAAATTTTGAAGAATGTAAATCCTGTCAGTCCATGGCAGGTGGAACTTCTTTCTGAGACACTCTTACTTCCTCAAATATTTTTCCCAACAAAGAGGTTCAGAACTACAGATGGTTCTGGAGTATTCACTAATGAAATGGGAGAATCCTCCTCTTCCGTTACAAGATTTTCTATTCCTGATTCAACAATGGGATTGCTGAATCAAACATTGTTGAGTAATTATGATACTCTTTTTTCTGCTAGCATGCAGGGAGCCAGGCCTCATCTATTTTCTGCAACTACTTATCCCTTCATTCCGATGGATCCTTCTCTGTCTATTGATAATTCCTTTGAGAATAATATTGTACCAAAGTTAAATGTTATGTTGCCAAAACTTAACATTGACACTCATAAGCCTAAAAACTTATCACCACATAGCAAGTCTAGTTTGACTCCCATTGATGAGACCCCTAACAGCAACTCAACCAAATCTGGAGCTACTTCATTTCAGTTATTTGGTTGTACTATTCAAACAGATCAAGTTTCTGATAAAATTGCTGACTATAACAATGTTGAAGGAGAAGACAACATACAATAA 1701 0.4785 MPRRSAPSSSLPPRPTPIPAKFWRACAGISAQAPVVNSRVYYFPQGHIDQAASQPQNLSPLVYSRPVIPCRVAAVNYFADPNTDEVFLKILLLPVTNGSAQDFLPPAVAAEGNSGNGNGDDEEVISYAKILTRSDANNGGGFSVPRSCADLVFPPLNFEEDPPVQNLRITDLHGAVWEFRHIYRGTPRRHLFTSGWSKFVNSKKIISGDTVVFMKDSHGRMFVGLRRNMSLEDGISDGGLDWVAAMVGMDEGEKEKEEEEEEAMTQGFARNEKGRVTSTSVAEAMELAAQNKPFEVVYYPSVGWGEFVVKAEKVDAMINGIPWSVGMRVKMGRENYDSSRMDWFQGTVSAVNVPGKDQPWSGSPWRTLQITWDESEILKNVNPVSPWQVELLSETLLLPQIFFPTKRFRTTDGSGVFTNEMGESSSSVTRFSIPDSTMGLLNQTLLSNYDTLFSASMQGARPHLFSATTYPFIPMDPSLSIDNSFENNIVPKLNVMLPKLNIDTHKPKNLSPHSKSSLTPIDETPNSNSTKSGATSFQLFGCTIQTDQVSDKIADYNNVEGEDNIQ* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2892 566 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 557 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy17g2892 566 MobiDBLite consensus disorder prediction 504 532 - -
Ahy17g2892 566 Gene3D - 124 229 IPR015300 -
Ahy17g2892 566 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Ahy17g2892 566 SMART B3_2 127 229 IPR003340 GO:0003677
Ahy17g2892 566 PANTHER AUXIN RESPONSE FACTOR 15 557 - -
Ahy17g2892 566 CDD B3_DNA 126 227 IPR003340 GO:0003677
Ahy17g2892 566 MobiDBLite consensus disorder prediction 511 532 - -
Ahy17g2892 566 Pfam Auxin response factor 284 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy17g2892 566 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Ahy17g2892 566 Gene3D - 323 396 - -
Ahy17g2892 566 SUPERFAMILY DNA-binding pseudobarrel domain 124 232 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2892 Ahy-Chr17 128431562 128433637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2892 22 551 B3 DNA Binding Superfamily AT1G77850 43.203 6.84e-132 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy17g2892 B3 5.80E-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2892 - - aip:107607845 1033.86