Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2875 ATGGAGGATTTGCAGAGTGTTCTTTTGGATCGCAACTTAACAGTTTCCAGTGTCCCAGAAAAGGGTCGTTCCCTCTTTGTAACAAAGGATTTTTACCCTGGGGAGGTAATCATAAGTCAAGAGCCTTATGTTTGTGTTCCAAACAACAACTCAGTTCAGAAAAGGTGCGAAGGATGTTTTACAACAACTAACCTTAAGAAATGCTCACGGTGCCAAGTTGTGTGGTACTGTGGAACCTCTTGTCAGAAGTTAGAGTGGAAGTTTCATCGTCTTGAATGTGAGGTCCTCTCTCGGCTAGACAACGACAAGAAAAAATATGTCACACCATCCATTCGATTGATGGTTAAACTTTATCTTCGAAGGAAGCTGCAAAATGAGAAGATCATACCAAGCACTGTTATGGACAACTACAACTTGGTGGAGGCTTTAGTGTCTCACATGTCTGACATCACCAAGGAGCAACTGCTGCTGTATGCGCAGATGGCTAATCTAGTAAACGTGATACTACAGTGGCCTGAAATCAATATAAAAGAGATTGCAGAAAATTTTTCTAAGTTTGCATGCAATGCACATACCATTTGTGACAGCGAGTTGAGACCATTGGGAACAGGATTGTATCCGGTTATTTCCATTATCAATCACAGCTGCTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGGTCAGCGTCAGTTCGAGCTGTGCAACATGTTCCCAAAGGTAGTGAGGTACTAATAAGTTACATAGAGACTGCTGGAAGCACTATGACTCGACAGAAAGCTCTCAAAGAGCAGTACCTATTCAATTGTACATGTCCTCGCTGTTCTAAACTGGGCCAGTATGATGATATCCGAGAAAGTGCAATTCTAGAAGGATACAGATGTAAAAATGAAAAATGTGATGGTTTCTTGCTTCGTACTACTGATGGAAAAGGATTCCAATGCCAACAATGTGGTTTGGTTAGGGAAAAGGAAGAGATAAAGAAAACTGCAACCGAGATAAAATCACTATCAGAGGAAGAAGCTTCTAAGCTTTCATCTGCCGGCTATTATCAAGAAGCTATTTCCATATATAAAATGATTGAGAAACTGCAAACAAAACTCTATCATCCTTTCTCCATCAACTTGATGCGAACTCGAGAGAAGATTTTGAAGTCATTGATGGAGCTGGAACATTGGAGTGAGGCTTTAGCATACTGCAAATTGACCATACCAGTCTATCAAAGTGCATATCCAGCTATTCACCCTCTGCTCGGTTTGCAGTACTATACATGTGGAAAACTTGAATGGTATCTGGGAGAAACAGAGGAAGCCGTGAAATCACTGACCAAGGCAGTGGATATACTAAGGATTACTCATGGGACAAACACACATTTTGTGACGGAACTTTTGATGAAGTTGGAAGAAGCCCGTGCCGAAGCATCTTACAAATCTTCCTCTAAAGAGTAG 1446 0.4129 MEDLQSVLLDRNLTVSSVPEKGRSLFVTKDFYPGEVIISQEPYVCVPNNNSVQKRCEGCFTTTNLKKCSRCQVVWYCGTSCQKLEWKFHRLECEVLSRLDNDKKKYVTPSIRLMVKLYLRRKLQNEKIIPSTVMDNYNLVEALVSHMSDITKEQLLLYAQMANLVNVILQWPEINIKEIAENFSKFACNAHTICDSELRPLGTGLYPVISIINHSCLPNSVLVFEGRSASVRAVQHVPKGSEVLISYIETAGSTMTRQKALKEQYLFNCTCPRCSKLGQYDDIRESAILEGYRCKNEKCDGFLLRTTDGKGFQCQQCGLVREKEEIKKTATEIKSLSEEEASKLSSAGYYQEAISIYKMIEKLQTKLYHPFSINLMRTREKILKSLMELEHWSEALAYCKLTIPVYQSAYPAIHPLLGLQYYTCGKLEWYLGETEEAVKSLTKAVDILRITHGTNTHFVTELLMKLEEARAEASYKSSSKE* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2875 481 Pfam SET domain 22 247 IPR001214 GO:0005515
Ahy17g2875 481 Coils Coil 319 339 - -
Ahy17g2875 481 ProSitePatterns Zinc finger MYND-type signature. 56 93 IPR002893 -
Ahy17g2875 481 Gene3D Tetratricopeptide repeat domain 402 480 IPR011990 GO:0005515
Ahy17g2875 481 SMART set_7 11 254 IPR001214 GO:0005515
Ahy17g2875 481 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 473 - -
Ahy17g2875 481 Gene3D SET domain 24 274 IPR046341 -
Ahy17g2875 481 SUPERFAMILY SET domain 8 247 IPR046341 -
Ahy17g2875 481 Gene3D - 55 105 - -
Ahy17g2875 481 Pfam MYND finger 56 93 IPR002893 -
Ahy17g2875 481 ProSiteProfiles SET domain profile. 11 248 IPR001214 GO:0005515
Ahy17g2875 481 ProSiteProfiles Zinc finger MYND-type profile. 56 93 IPR002893 -
Ahy17g2875 481 Gene3D - 106 190 - -
Ahy17g2875 481 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 473 - -
Ahy17g2875 481 SUPERFAMILY TPR-like 342 447 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2875 Ahy-Chr17 128093411 128097644 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ahy17g2875 SET 1.50E-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2875 K11426 - gmx:100789518 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2875 17 128093411 128097644 Ahy17g2875 17 128093411 128097644 ECH
Ahy17g2875 17 128093411 128097644 Ahy8g0589 8 11497803 11502019 hybridization