Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2867 ATGGCAGCGGAGACTCAGAGATCCACGGGCACAGTGAAATGGTTCAACGCACAGAAGGGTTTCGGATTCATAGCTCCCGACGATGGCGGCGAGGATCTCTTCGTCCACCACTCTGCCATTCGATCCGACGGTTACCGTACACTCTCCGAGGGCCAGCCGGTTGAGTTTGCCGTTGATTACGGCGACGCCGGCAGAACTAAGGCCGTCGATGTCTCTTCCATGGCTAGATCTCGCCCGTTTGGTGGTGGCTTTCGAGGTGGAGGGGGAAGAGGAGGAAGAGGAAGAGGTGGTGGAAGGTTCGGTGGGCGTTATGGCGGCGGTGAAGGCCGGGGCGACGGTGACGGTTACAGTTACGGAAGAGGTGGAGGCGGTGGTCGTAGAGGAGGAGGTTATGGCGGTGGAGGAGGCCCTGAGTGTTACAATTGTGGACGAACAGGTCACTTGGCGAGAGATTGTTACCAGGGACAGGGTGGTGGAAACCGGAGACGAGGCGGCGGAAGCGGCGGCGGTGGTGGTGGAGGTTGTTTTAACTGTGGGGAGAAAGGGCATTTTGCGAGAGAATGTCCGAACGCTGAAAATTGA 582 0.5842 MAAETQRSTGTVKWFNAQKGFGFIAPDDGGEDLFVHHSAIRSDGYRTLSEGQPVEFAVDYGDAGRTKAVDVSSMARSRPFGGGFRGGGGRGGRGRGGGRFGGRYGGGEGRGDGDGYSYGRGGGGGRRGGGYGGGGGPECYNCGRTGHLARDCYQGQGGGNRRRGGGSGGGGGGGCFNCGEKGHFARECPNAEN* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2867 193 SUPERFAMILY Nucleic acid-binding proteins 6 72 IPR012340 -
Ahy17g2867 193 CDD CSP_CDS 9 71 IPR002059 GO:0003676
Ahy17g2867 193 PRINTS Cold shock protein signature 10 25 IPR002059 GO:0003676
Ahy17g2867 193 PRINTS Cold shock protein signature 46 64 IPR002059 GO:0003676
Ahy17g2867 193 PRINTS Cold shock protein signature 31 40 IPR002059 GO:0003676
Ahy17g2867 193 MobiDBLite consensus disorder prediction 80 113 - -
Ahy17g2867 193 ProSiteProfiles Cold-shock (CSD) domain profile. 7 73 IPR002059 GO:0003676
Ahy17g2867 193 Pfam Zinc knuckle 174 190 IPR001878 GO:0003676|GO:0008270
Ahy17g2867 193 Pfam Zinc knuckle 138 152 IPR001878 GO:0003676|GO:0008270
Ahy17g2867 193 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 191 - -
Ahy17g2867 193 SMART csp_8 9 74 IPR011129 GO:0003676
Ahy17g2867 193 ProSiteProfiles Zinc finger CCHC-type profile. 175 190 IPR001878 GO:0003676|GO:0008270
Ahy17g2867 193 ProSiteProfiles Zinc finger CCHC-type profile. 139 152 IPR001878 GO:0003676|GO:0008270
Ahy17g2867 193 Pfam 'Cold-shock' DNA-binding domain 9 72 IPR002059 GO:0003676
Ahy17g2867 193 SUPERFAMILY Retrovirus zinc finger-like domains 128 191 IPR036875 GO:0003676|GO:0008270
Ahy17g2867 193 Gene3D - 170 193 - -
Ahy17g2867 193 Gene3D - 134 165 - -
Ahy17g2867 193 SMART c2hcfinal6 174 190 IPR001878 GO:0003676|GO:0008270
Ahy17g2867 193 SMART c2hcfinal6 138 154 IPR001878 GO:0003676|GO:0008270
Ahy17g2867 193 ProSitePatterns Cold-shock (CSD) domain signature. 21 40 IPR019844 -
Ahy17g2867 193 Gene3D - 1 72 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2867 Ahy-Chr17 128005617 128006568 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Ahy17g2867 CSD 3.10E-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2867 - - jre:109013657 179.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2867 17 128005617 128006568 Ahy8g0583 8 11400101 11401068 hybridization