Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2859 ATGCATCCTCATAAACACAAATATAAAACATGGTTCCATGCATGCATCCCAAAACAAACCATCATAATAATGTCTGTGAGTCCACCAAGAGAAAGAAGCAACAACAATAACAATGGATTCCAACTATACTGGTGCTTCCAGTGCAACCGCATGGTGCGAGCCGCACACGATAACAACCCATCCTGTCCACGCTGCTTTGGCCAATTCATCCAAGAAATCAACATGCCAACCCCAAGACTCTTTCTCGATTTTACCCCTAACACTAACCACCCTTCTCCACAGCCCCGTCTTCTAGAAGCTCTCTCCCTCATGCTCGATCCCGCCTTCCAACAACCCCGTCGCCGCCCCCGCATCCGCCGCCGCCAACCTTCCGACACACCCGACCCCCACCCTACAACTCGTCCCCGAACCTGGATCATTGTCCATCCCATCGGTGCTTCCCCCGAGGAGCTCGAAGCCATGGTTCCGCCGCCGCGCCGCGACCGTCCGGTGGTGCCGATCGGGGTGGACTCCAGGGACTACTTCCTTGGTCCGGGACTGAACGAGCTGATCGAGCAGATTACCGAGAATGATAGGCCGGGTCCGGCGCCGGCGGCGGAGAGAGCAATCAGAGGGATACCGAGAGTGAAAATAGAAGCACAGCATCTGAAAGAGAATTCTCAGTGTCCGGTTTGTCAGGAAGAGTTTGAGGTTGGTGAAGAAGTGAGGGAGCTTCCATGTAAGCATGTTTATCACTCTGATTGCATTGTTCCGTGGCTGAGGCTTCATAATTCTTGCCCCGTTTGCCGCCATGAGGTGCCCGATGGTGATGATGATGATGAATGTGTTGCTGAGGGGAGGTTTCAGAGGTGCTTGAGGTGGACGAGGGTTTCTTCTCTTTGGCCATTTCATCACCACCGTCGACGTGTTCATCCTGCTGATCCAGGACCAGGAGAGAATAATAACGCTACTGCTTCTCTCAGGGTACCTAATCCAAGACGCTCTTGCACCATTCTTTAA 999 0.5295 MHPHKHKYKTWFHACIPKQTIIIMSVSPPRERSNNNNNGFQLYWCFQCNRMVRAAHDNNPSCPRCFGQFIQEINMPTPRLFLDFTPNTNHPSPQPRLLEALSLMLDPAFQQPRRRPRIRRRQPSDTPDPHPTTRPRTWIIVHPIGASPEELEAMVPPPRRDRPVVPIGVDSRDYFLGPGLNELIEQITENDRPGPAPAAERAIRGIPRVKIEAQHLKENSQCPVCQEEFEVGEEVRELPCKHVYHSDCIVPWLRLHNSCPVCRHEVPDGDDDDECVAEGRFQRCLRWTRVSSLWPFHHHRRRVHPADPGPGENNNATASLRVPNPRRSCTIL* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2859 332 Pfam zinc-ribbon 41 73 IPR039525 GO:0061630
Ahy17g2859 332 MobiDBLite consensus disorder prediction 312 332 - -
Ahy17g2859 332 PANTHER - 35 272 - -
Ahy17g2859 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 35 272 - -
Ahy17g2859 332 SUPERFAMILY RING/U-box 203 267 - -
Ahy17g2859 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 269 IPR013083 -
Ahy17g2859 332 CDD RING-H2_RNF126_like 221 263 - -
Ahy17g2859 332 MobiDBLite consensus disorder prediction 109 136 - -
Ahy17g2859 332 SMART ring_2 222 262 IPR001841 -
Ahy17g2859 332 ProSiteProfiles Zinc finger RING-type profile. 222 263 IPR001841 -
Ahy17g2859 332 MobiDBLite consensus disorder prediction 300 332 - -
Ahy17g2859 332 Pfam Ring finger domain 221 263 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2859 Ahy-Chr17 127815039 127816952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2859 161 274 C3H Transcription Factor Family AT5G01980 42.241 3.11e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2859 K11982 - gmx:100787399 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2859 17 127815039 127816952 Ahy17g2859 17 127815039 127816952 ECH
Ahy17g2859 17 127815039 127816952 Ahy8g0571 8 11221189 11223093 hybridization