Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2825 ATGGAAGGTGATGATGGAAAACAACCAACCCACAAAGAACCATGCAATAATAATAGTAGTAATAATAATGAATTATTTGAGCAAGAGAACTTTGATTATATTCTTGCAATTAGCTTGCAAGAACAAGAGGGAGCAACATACACAACCCTAGCAACCATGGAAAGTGAGGACGATGAAGAAGACGACGACGAAGATGATTATTCCTCGTTGGGCGATGAAGATGGCGATTCCGAGTATTATTTAGAAAGCCAAGACTTTGAGGAGTCAGAAACCCAGTTCCTTGAAGGTGAAGGAAGCAACTACGACGAAGATGACGAGGGAGAAGAAGAAGAGATGGAAGAAGATGAAATTGATCCAGATGAAATGTCCTATGAAGAGTTGATTGAGTTGGGAGAAATCATAGGAGAAGAGAATAGAGGATTATCAGAAAATGAAGTGTCTTCTTGCTTATACCCTTACACTTGCAAATCTAATAGTGATGATGAAAGAATCGATCGGTGTGTAGTTTGTCAGATAGAATATGAAGAAGGTGAATCAATGGTGGCACTGGAATGTAAGCACCCTTTTCATGAAGATTGCATAACCACATGGCTTCAGATTAAGAAGGTTTGTCCAATTTGTGGCAATGAAGTTTCAACCAATAATAATAATACCAACAAGATCATGCCTAAGAATGAATAA 681 0.3818 MEGDDGKQPTHKEPCNNNSSNNNELFEQENFDYILAISLQEQEGATYTTLATMESEDDEEDDDEDDYSSLGDEDGDSEYYLESQDFEESETQFLEGEGSNYDEDDEGEEEEMEEDEIDPDEMSYEELIELGEIIGEENRGLSENEVSSCLYPYTCKSNSDDERIDRCVVCQIEYEEGESMVALECKHPFHEDCITTWLQIKKVCPICGNEVSTNNNNTNKIMPKNE* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2825 226 ProSiteProfiles Zinc finger RING-type profile. 167 207 IPR001841 -
Ahy17g2825 226 SUPERFAMILY RING/U-box 166 214 - -
Ahy17g2825 226 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 21 216 - -
Ahy17g2825 226 SMART ring_2 167 207 IPR001841 -
Ahy17g2825 226 MobiDBLite consensus disorder prediction 53 121 - -
Ahy17g2825 226 Pfam Ring finger domain 166 207 IPR001841 -
Ahy17g2825 226 MobiDBLite consensus disorder prediction 1 26 - -
Ahy17g2825 226 MobiDBLite consensus disorder prediction 46 121 - -
Ahy17g2825 226 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 216 IPR033276 GO:0004842|GO:0016567|GO:0046621
Ahy17g2825 226 MobiDBLite consensus disorder prediction 12 26 - -
Ahy17g2825 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 224 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2825 Ahy-Chr17 127149632 127150549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2825 102 211 C3H Transcription Factor Family AT3G63530 44.643 5.32e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2825 K19045 - gmx:100526881 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2825 17 127149632 127150549 Ahy8g0544 8 10807845 10808867 hybridization