Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2823 ATGGCGGAGACTATCTCTCCCATGGAAATCGACGGCAACGAAACCCCTTTCCCTTCAAGTACCGACAAGGGTAAGAGGGTCTTCGTCGCCGGGAACAACTCCGGTAAAGGCAAGGCCACTCCGTGGGTCGAGAAGTACCGCCCTCAGTCCCTAGATGACGTCGCTGCTCACCGTGACATCATCAGTACCATTGATAGGCTGACTACTGAGAACAGATTGCCACATCTTCTACTATATGGTCCACCTGGCACGGGCAAAACTTCGACTATTCTTGCCGTGGCACGCAAACTCTATGGAAAGCAATACCACAAGATGATTTTGGAGCTCAATGCCTCTGATGAAAGAGGAATTGATGTTGTACGGCAGCAGATTCAAGATTTTGCTAGCACCCAGAGCTTAACATTTGGTGCAAAGGCCTTAGTGAAATTGGTCTTGCTAGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGTACAAGGTTTGCACTTATCTGCAATCATGTAAATAAGATTATCCCTGCACTACAATCAAGGTGCACTCGATTTCGATTTGCCCCTCTTGATGAAGTCCATGTCACTGATAGACTGAAGCATGTTATTAAAGCTGAAGGGCTTGATGTTGAAGACAGTGGCTTAGCTGCACTTGTTCGCCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACGCATATGGCTTCTCAGCAGATAACAGAAGAAGCTGTATACCTGTGCACTGGAAATCCATTGCCCAAAGATATTGAGCAAATATCTTATTGGCTGCTAAATGAACAATTTTCAGAGAGTTTTAGAAGAATACATGAAATCAAGACAAGGAAAGGATTGGCCCTGGTAGATATTGTGAGAGAAGTGACAATGTTTGTCTTTAAGATTAAGATGCCTCCAGATGTCCGAGTACAGTTGATTAATGATTTGGCAGACATAGAGTACAGATTAAGTTTTGGGTGCAATGACAAGCTTCAGCTTGGTTCAATTATTGCTACGTTTACTCGAGCCAGATCTGCACTGGTTGCTGCTGCTAAATAG 1092 0.4368 MAETISPMEIDGNETPFPSSTDKGKRVFVAGNNSGKGKATPWVEKYRPQSLDDVAAHRDIISTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGKQYHKMILELNASDERGIDVVRQQIQDFASTQSLTFGAKALVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDEVHVTDRLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFSESFRRIHEIKTRKGLALVDIVREVTMFVFKIKMPPDVRVQLINDLADIEYRLSFGCNDKLQLGSIIATFTRARSALVAAAK* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2823 363 CDD AAA 60 198 - -
Ahy17g2823 363 CDD HLD_clamp_RFC 199 261 - -
Ahy17g2823 363 Pfam Replication factor C C-terminal domain 264 349 IPR013748 -
Ahy17g2823 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 354 IPR008921 GO:0003677|GO:0006260
Ahy17g2823 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 257 IPR027417 -
Ahy17g2823 363 MobiDBLite consensus disorder prediction 1 24 - -
Ahy17g2823 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 36 359 - -
Ahy17g2823 363 SMART AAA_5 72 202 IPR003593 -
Ahy17g2823 363 Gene3D - 264 361 - -
Ahy17g2823 363 Gene3D - 201 263 - -
Ahy17g2823 363 PANTHER REPLICATION FACTOR C SUBUNIT 5 36 359 - -
Ahy17g2823 363 Gene3D - 34 198 IPR027417 -
Ahy17g2823 363 Pfam ATPase family associated with various cellular activities (AAA) 76 196 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2823 Ahy-Chr17 127090448 127094558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2823 1 363 Core DNA Replication Machinery Family AT1G77470 77.898 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2823 K10756 - gmx:100782652 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2823 17 127090448 127094558 Ahy8g0542 8 10759803 10763930 hybridization