Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy17g2647 ATGGATGATAACAACTTATCAGATATCTTCCAAGACAAAGACTTTGGTGGAGACGATCTCTTTGCCATCTTGGAGAGCCTCGATGACTTCACTCCCACCAACACCGTACAATTTCCCACCCTACTTGAATCATCATCACTGCCCTCGCCTCCAACCAAACGACGGAAACTACTTGTTCCGCCGCCACCGCCTTCTCCCAATGCCGCCGAGGATGGACAACAAAGGATGTCTCATATCACGGTCGAGCGCAACCGTAGAAAGCAGATGAACGAGCATTTGTCCGTCCTCAGATCCCTCATGCCTTGTTTTTACGTCAAGCGAGGTGATCAAGCATCCATAATTGGAGGCGTGGTTGATTACATCAACGAGTTGCAACAAGTTCTTCAAGCACTTGAAGCAAAGAAACAAAGAAAAGTTTACACTGATCATGTTCTAAGCCCTAGGCTCGTCTCAAGCCCAAGGACTTCACTATCACTACCACTCAGCCCACGGAAACCACCCTTGAGCCCTAGGCTAAGCCTGCCCATAAGCCCAAGGACTCCTCAACCGGGTAGCCCATACAGGCCGCCGGCGCCCTGCAGGCTGTTGCAGCCCGCCGCCGCAGCAGCAAGCAGTTACATTTCGCCGGCGGCGTCGATATCGAATTCTCTTGAGCCATCTCCAACTACGTCTTCCGCTTCCTCCATCAATGATGACATCAACGAGCTCGTTGCGAATTCAAAATCTGCCATGGCTGAGGTTGAGGTCAAGTTCTCGGGTCCTCACCTTCTTCTCAAAACGGTGTCGCAGCGAATTCCCGGGCAAGCATTGAAGATCATTTCAGCGCTTGAAGATCTTGCGCTTGAAATTCTTCAAGTTAATATCAGCACTGCTGATGAAACCATGCTTAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCGGACGAACTAGCCCAACAAATACAGCAAACATTCTGCTAG 972 0.4969 MDDNNLSDIFQDKDFGGDDLFAILESLDDFTPTNTVQFPTLLESSSLPSPPTKRRKLLVPPPPPSPNAAEDGQQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYTDHVLSPRLVSSPRTSLSLPLSPRKPPLSPRLSLPISPRTPQPGSPYRPPAPCRLLQPAAAAASSYISPAASISNSLEPSPTTSSASSINDDINELVANSKSAMAEVEVKFSGPHLLLKTVSQRIPGQALKIISALEDLALEILQVNISTADETMLNSFTIKIGIECQLSADELAQQIQQTFC* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy17g2647 323 MobiDBLite consensus disorder prediction 41 75 - -
Ahy17g2647 323 Pfam Helix-loop-helix DNA-binding domain 74 125 IPR011598 GO:0046983
Ahy17g2647 323 Coils Coil 117 141 - -
Ahy17g2647 323 CDD bHLH_AtFAMA_like 76 142 - -
Ahy17g2647 323 PANTHER TRANSCRIPTION FACTOR FAMA 49 323 IPR044283 GO:0003700|GO:0010052
Ahy17g2647 323 MobiDBLite consensus disorder prediction 151 192 - -
Ahy17g2647 323 Gene3D - 66 151 IPR036638 GO:0046983
Ahy17g2647 323 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 49 323 - -
Ahy17g2647 323 SMART finulus 79 130 IPR011598 GO:0046983
Ahy17g2647 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 124 IPR011598 GO:0046983
Ahy17g2647 323 MobiDBLite consensus disorder prediction 163 192 - -
Ahy17g2647 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 149 IPR036638 GO:0046983
Ahy17g2647 323 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy17g2647 Ahy-Chr17 123373954 123377228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy17g2647 10 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 53.153 3.01e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy17g2647 HLH 7.10E-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy17g2647 K20558 - rcu:8274388 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2647 17 123373954 123377228 Ahy17g2647 17 123373954 123377228 ECH
Ahy17g2647 17 123373954 123377228 Ahy8g0414 8 8453020 8455785 hybridization